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. 1999 Sep;15(9):769-70.
doi: 10.1093/bioinformatics/15.9.769.

MatrixPlot: visualizing sequence constraints

J Gorodkin  1 , H H Staerfeldt, O Lund, S Brunak
Affiliations

MatrixPlot: visualizing sequence constraints

J Gorodkin et al. Bioinformatics. 1999 Sep.

Abstract

MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information about the sequences (e.g. a sequence logo profile) along the edges of the plot, as well as zoom in on any region in the plot.

Availability: MatrixPlot can be obtained on request, and can also be accessed online at http://www. cbs.dtu.dk/services/MatrixPlot.

Contact: gorodkin@cbs.dtu.dk

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