GenBank
- PMID: 10592170
- PMCID: PMC102453
- DOI: 10.1093/nar/28.1.15
GenBank
Abstract
The GenBank((R))sequence database incorporates publicly available DNA sequences of >55 000 different organisms, primarily through direct submission of sequence data from individual laboratories and large-scale sequencing projects. Most submissions are made using the BankIt (Web) or Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Data exchange with the EMBL Data Library and the DNA Data Bank of Japan helps ensure comprehensive worldwide coverage. GenBank data is accessible through NCBI's integrated retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping and protein structure information, plus the biomedical literature via PubMed. Sequence similarity searching is provided by the BLAST family of programs. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. NCBI also offers a wide range of WWW retrieval and analysis services based on GenBank data. The GenBank database and related resources are freely accessible via the NCBI home page at http://www.ncbi.nlm.nih.gov
Similar articles
-
GenBank.Nucleic Acids Res. 2002 Jan 1;30(1):17-20. doi: 10.1093/nar/30.1.17. Nucleic Acids Res. 2002. PMID: 11752243 Free PMC article.
-
GenBank.Nucleic Acids Res. 2003 Jan 1;31(1):23-7. doi: 10.1093/nar/gkg057. Nucleic Acids Res. 2003. PMID: 12519940 Free PMC article.
-
GenBank.Nucleic Acids Res. 2007 Jan;35(Database issue):D21-5. doi: 10.1093/nar/gkl986. Nucleic Acids Res. 2007. PMID: 17202161 Free PMC article.
-
Database resources of the National Center for Biotechnology Information.Nucleic Acids Res. 2021 Jan 8;49(D1):D10-D17. doi: 10.1093/nar/gkaa892. Nucleic Acids Res. 2021. PMID: 33095870 Free PMC article. Review.
-
The EMBL Nucleotide Sequence Database. Contributing and accessing data.Mol Biotechnol. 1999 Oct;12(3):255-67. doi: 10.1385/MB:12:3:255. Mol Biotechnol. 1999. PMID: 10631682 Review.
Cited by
-
Characterization of lead-resistant river isolate Enterococcus faecalis and assessment of its multiple metal and antibiotic resistance.Environ Monit Assess. 2013 Jun;185(6):5285-93. doi: 10.1007/s10661-012-2945-x. Epub 2012 Oct 19. Environ Monit Assess. 2013. PMID: 23079796
-
Beyond blast: enabling microbiologists to better extract literature, taxonomic distributions and gene neighbourhood information for protein families.Microb Genom. 2024 Feb;10(2):001183. doi: 10.1099/mgen.0.001183. Microb Genom. 2024. PMID: 38323604 Free PMC article.
-
A manager's guide to using eDNA metabarcoding in marine ecosystems.PeerJ. 2022 Nov 15;10:e14071. doi: 10.7717/peerj.14071. eCollection 2022. PeerJ. 2022. PMID: 36405018 Free PMC article.
-
Evaluation of the in vitro effects of concentrations of antibiotics on three Enterobacteriaceae isolates.World J Microbiol Biotechnol. 2024 Jan 19;40(2):73. doi: 10.1007/s11274-023-03877-w. World J Microbiol Biotechnol. 2024. PMID: 38240926 Free PMC article.
-
The diversity of microorganisms associated with Acromyrmex leafcutter ants.BMC Evol Biol. 2002 May 3;2:9. doi: 10.1186/1471-2148-2-9. BMC Evol Biol. 2002. PMID: 12019020 Free PMC article.
References
-
- Boguski M.S., Lowe,T.M. and Tolstoshev,C.M. (1993) Nature Genet., 4, 332–333. - PubMed
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Research Materials