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Comparative Study
. 2000 Jan 1;28(1):267-9.
doi: 10.1093/nar/28.1.267.

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

F Corpet  1 , F Servant, J Gouzy, D Kahn
Affiliations
Comparative Study

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

F Corpet et al. Nucleic Acids Res. .

Abstract

ProDom contains all protein domain families automatically generated from the SWISS-PROT and TrEMBL sequence databases (http://www. toulouse.inra.fr/prodom.html ). ProDom-CG results from a similar domain analysis as applied to completed genomes (http://www.toulouse. inra.fr/prodomCG.html ). Recent improvements to the ProDom database and its server include: scaling up to include sequences from TrEMBL, addition of Pfam-A entries to the set of expert validated families, assignment of stable accession numbers, consistency indicators for domain families, domain arrangements of sub-families and links to Pfam-A.

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Figures

Figure 1
Figure 1
(a) Distribution of the number of domains per sequence in ProDom 99.2. (b) Distribution of the length in amino acids of individual domains in ProDom 99.2.
Figure 2
Figure 2
Distribution of the diameter (a) and radius of gyration (b) of ProDom families (release 99.2). Note that the first points of both distributions lie outside the scale: 5411 families are completely redundant with a diameter of 0 PAM.
See this image and copyright information in PMC

References

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    1. Corpet F., Gouzy,J. and Kahn,D. (1999) Nucleic Acids Res., 27, 263–267. - PMC - PubMed
    1. Bairoch A. and Apweiler,R. (1999) Nucleic Acids Res., 27, 49–54. Updated article in this issue: Nucleic Acids Res. (2000), 28, 45–48.
    1. Hofmann K., Bucher,P., Falquet,L. and Bairoch,A. (1999) Nucleic Acids Res., 27, 215–219. - PMC - PubMed
    1. Bateman A., Birney,E., Durbin,R., Eddy,S.R., Finn,R.D. and Sonnhammer,E.L.L. (1999) Nucleic Acids Res., 27, 260–262. Updated article in this issue: Nucleic Acids Res. (2000), 28, 263–266.

Publication types