The Giardia genome project database
- PMID: 10930750
- DOI: 10.1111/j.1574-6968.2000.tb09242.x
The Giardia genome project database
Abstract
The Giardia genome project database provides an online resource for Giardia lamblia (WB strain, clone C6) genome sequence information. The database includes edited single-pass reads, the results of BLASTX searches, and details of progress towards sequencing the entire 12 million-bp Giardia genome. Pre-sorted BLASTX results can be retrieved based on keyword searches and BLAST searches of the high throughput Giardia data can be initiated from the web site or through NCBI. Descriptions of the genomic DNA libraries, project protocols and summary statistics are also available. Although the Giardia genome project is ongoing, new sequences are made available on a bi-monthly basis to ensure that researchers have access to information that may assist them in the search for genes and their biological function. The current URL of the Giardia genome project database is www.mbl.edu/Giardia.
Similar articles
-
Sequence survey of the Giardia lamblia genome.Mol Biochem Parasitol. 1998 Sep 15;95(2):267-80. doi: 10.1016/s0166-6851(98)00113-3. Mol Biochem Parasitol. 1998. PMID: 9803418
-
The Giardia lamblia genome.Int J Parasitol. 2000 Apr 10;30(4):475-84. doi: 10.1016/s0020-7519(99)00191-5. Int J Parasitol. 2000. PMID: 10731570 Review.
-
A chromosome-scale reference genome for Giardia intestinalis WB.Sci Data. 2020 Feb 4;7(1):38. doi: 10.1038/s41597-020-0377-y. Sci Data. 2020. PMID: 32019935 Free PMC article.
-
Inferring protein function from genomic sequence: Giardia lamblia expresses a phosphatidylinositol kinase-related kinase similar to yeast and mammalian TOR.Comp Biochem Physiol B Biochem Mol Biol. 2002 Dec;133(4):477-91. doi: 10.1016/s1096-4959(02)00218-x. Comp Biochem Physiol B Biochem Mol Biol. 2002. PMID: 12470813
-
Giardia--from genome to proteome.Adv Parasitol. 2012;78:57-95. doi: 10.1016/B978-0-12-394303-3.00003-7. Adv Parasitol. 2012. PMID: 22520441 Review.
Cited by
-
DNA topoisomerase II is involved in regulation of cyst wall protein genes and differentiation in Giardia lamblia.PLoS Negl Trop Dis. 2013 May 16;7(5):e2218. doi: 10.1371/journal.pntd.0002218. Print 2013. PLoS Negl Trop Dis. 2013. PMID: 23696909 Free PMC article.
-
Dual acylation accounts for the localization of {alpha}19-giardin in the ventral flagellum pair of Giardia lamblia.Eukaryot Cell. 2009 Oct;8(10):1567-74. doi: 10.1128/EC.00136-09. Epub 2009 Aug 14. Eukaryot Cell. 2009. PMID: 19684283 Free PMC article.
-
DNA topoisomerase IIIβ promotes cyst generation by inducing cyst wall protein gene expression in Giardia lamblia.Open Biol. 2020 Feb;10(2):190228. doi: 10.1098/rsob.190228. Epub 2020 Feb 5. Open Biol. 2020. PMID: 32019477 Free PMC article.
-
The calpains: modular designs and functional diversity.Genome Biol. 2007;8(6):218. doi: 10.1186/gb-2007-8-6-218. Genome Biol. 2007. PMID: 17608959 Free PMC article. Review.
-
Evidence for lateral transfer of genes encoding ferredoxins, nitroreductases, NADH oxidase, and alcohol dehydrogenase 3 from anaerobic prokaryotes to Giardia lamblia and Entamoeba histolytica.Eukaryot Cell. 2002 Apr;1(2):181-90. doi: 10.1128/EC.1.2.181-190.2002. Eukaryot Cell. 2002. PMID: 12455953 Free PMC article.
Publication types
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources
Research Materials
Miscellaneous