Assessing thesaurus-based query expansion using the UMLS Metathesaurus
- PMID: 11079902
- PMCID: PMC2244120
Assessing thesaurus-based query expansion using the UMLS Metathesaurus
Abstract
Objectives: Assess query expansion using thesaurus relationships and definitions in the UMLS Metathesaurus for improving searching performance.
Methods: The queries from a MEDLINE test collection (OHSUMED) were expanded using synonym, hierarchical, and related term information as well as term definitions from the UMLS Metathesaurus. Documents were retrieved from a word-statistical retrieval system and assessed for recall and precision based on relevance judgments from the test collection.
Results: All types of query expansion degraded aggregate retrieval performance as measured by recall and precision, although 38.6% of the queries with synonym expansion and up to 29.7% of the queries with hierarchical expansion showed improvement.
Conclusions: Thesaurus-based query expansion causes a decline in retrieval performance generally but improves it in specific instances. Further research must focus on identifying instances where performance improves and how it can be exploited by real users.
Similar articles
-
Query expansion using the UMLS Metathesaurus.Proc AMIA Annu Fall Symp. 1997:485-9. Proc AMIA Annu Fall Symp. 1997. PMID: 9357673 Free PMC article.
-
On the query reformulation technique for effective MEDLINE document retrieval.J Biomed Inform. 2010 Oct;43(5):686-93. doi: 10.1016/j.jbi.2010.04.005. Epub 2010 Apr 13. J Biomed Inform. 2010. PMID: 20394839
-
Enhanced LexSynonym Acquisition for Effective UMLS Concept Mapping.Stud Health Technol Inform. 2017;245:501-505. Stud Health Technol Inform. 2017. PMID: 29295145
-
Versatile user interface using UMLS Metathesaurus.Proc AMIA Symp. 2000:888-92. Proc AMIA Symp. 2000. PMID: 11080012 Free PMC article.
-
Towards semantic-driven boolean query formalization for biomedical systematic literature reviews.Int J Med Inform. 2023 Feb;170:104928. doi: 10.1016/j.ijmedinf.2022.104928. Epub 2022 Nov 24. Int J Med Inform. 2023. PMID: 36442443
Cited by
-
Knowledge-based methods to help clinicians find answers in MEDLINE.J Am Med Inform Assoc. 2007 Nov-Dec;14(6):772-80. doi: 10.1197/jamia.M2407. Epub 2007 Aug 21. J Am Med Inform Assoc. 2007. PMID: 17712086 Free PMC article.
-
A transformation-based method for auditing the IS-A hierarchy of biomedical terminologies in the Unified Medical Language System.J Am Med Inform Assoc. 2020 Oct 1;27(10):1568-1575. doi: 10.1093/jamia/ocaa123. J Am Med Inform Assoc. 2020. PMID: 32918476 Free PMC article.
-
A New Biomedical Passage Retrieval Framework for Laboratory Medicine: Leveraging Domain-specific Ontology, Multilevel PRF, and Negation Differential Weighting.J Healthc Eng. 2018 Dec 24;2018:3943417. doi: 10.1155/2018/3943417. eCollection 2018. J Healthc Eng. 2018. PMID: 30675333 Free PMC article.
-
Enhanced Quality Measurement Event Detection: An Application to Physician Reporting.EGEMS (Wash DC). 2017 May 30;5(1):5. doi: 10.13063/2327-9214.1270. EGEMS (Wash DC). 2017. PMID: 29881731 Free PMC article.
-
Emergency Medical Text Classifier: New system improves processing and classification of triage notes.Online J Public Health Inform. 2014 Oct 16;6(2):e178. doi: 10.5210/ojphi.v6i2.5469. eCollection 2014. Online J Public Health Inform. 2014. PMID: 25379126 Free PMC article.
References
Publication types
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources