The dead-end elimination theorem: mathematical aspects, implementation, optimizations, evaluation, and performance
- PMID: 11084910
- DOI: 10.1385/1-59259-368-2:265
The dead-end elimination theorem: mathematical aspects, implementation, optimizations, evaluation, and performance
Similar articles
-
Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.Bioinformatics. 2006 Jul 15;22(14):e174-83. doi: 10.1093/bioinformatics/btl220. Bioinformatics. 2006. PMID: 16873469
-
Theoretical and algorithmical optimization of the dead-end elimination theorem.Pac Symp Biocomput. 1997:122-33. Pac Symp Biocomput. 1997. PMID: 9390285
-
FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded.Bioinformatics. 2005 Aug 15;21(16):3435-8. doi: 10.1093/bioinformatics/bti537. Epub 2005 Jun 14. Bioinformatics. 2005. PMID: 15955783
-
Computer-based design of novel protein structures.Annu Rev Biophys Biomol Struct. 2006;35:49-65. doi: 10.1146/annurev.biophys.35.040405.102046. Annu Rev Biophys Biomol Struct. 2006. PMID: 16689627 Review.
-
Identifying structural domains in proteins.Methods Biochem Anal. 2003;44:365-85. Methods Biochem Anal. 2003. PMID: 12647395 Review. No abstract available.
Cited by
-
Rational and computational design of stabilized variants of cyanovirin-N that retain affinity and specificity for glycan ligands.Biochemistry. 2011 Dec 13;50(49):10698-712. doi: 10.1021/bi201411c. Epub 2011 Nov 16. Biochemistry. 2011. PMID: 22032696 Free PMC article.
-
Action-at-a-distance interactions enhance protein binding affinity.Protein Sci. 2005 May;14(5):1363-9. doi: 10.1110/ps.041283105. Epub 2005 Mar 31. Protein Sci. 2005. PMID: 15802650 Free PMC article.
-
An unusual red-edge excitation and time-dependent Stokes shift in the single tryptophan mutant protein DD-carboxypeptidase from Streptomyces: the role of dynamics and tryptophan rotamers.Protein Sci. 2008 Feb;17(2):352-61. doi: 10.1110/ps.073147608. Epub 2007 Dec 20. Protein Sci. 2008. PMID: 18096643 Free PMC article.
-
Development of resistance against diketo derivatives of human immunodeficiency virus type 1 by progressive accumulation of integrase mutations.J Virol. 2003 Nov;77(21):11459-70. doi: 10.1128/jvi.77.21.11459-11470.2003. J Virol. 2003. PMID: 14557631 Free PMC article.
-
Tryptophan rotamers as evidenced by X-ray, fluorescence lifetimes, and molecular dynamics modeling.Biophys J. 2006 Aug 1;91(3):816-23. doi: 10.1529/biophysj.106.085100. Epub 2006 May 12. Biophys J. 2006. PMID: 16698786 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources