Horizontal gene transfer among microbial genomes: new insights from complete genome analysis
- PMID: 11088009
- DOI: 10.1016/s0959-437x(00)00143-x
Horizontal gene transfer among microbial genomes: new insights from complete genome analysis
Abstract
The determination and analysis of complete genome sequences has led to the suggestion that horizontal gene transfer may be much more extensive than previously appreciated. Many of these studies, however, rely on evidence that could be generated by forces other than gene transfer including selection, variable evolutionary rates, and biased sampling.
Similar articles
-
Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.BMC Evol Biol. 2003 Jan 6;3:2. doi: 10.1186/1471-2148-3-2. Epub 2003 Jan 6. BMC Evol Biol. 2003. PMID: 12515582 Free PMC article.
-
Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes.BMC Biol. 2014 Aug 21;12:66. doi: 10.1186/s12915-014-0066-4. BMC Biol. 2014. PMID: 25141959 Free PMC article.
-
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.Genome Res. 2001 Mar;11(3):356-72. doi: 10.1101/gr.gr-1619r. Genome Res. 2001. PMID: 11230160
-
Rates of Lateral Gene Transfer in Prokaryotes: High but Why?Trends Microbiol. 2015 Oct;23(10):598-605. doi: 10.1016/j.tim.2015.07.006. Trends Microbiol. 2015. PMID: 26433693 Review.
-
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world.Nucleic Acids Res. 2008 Dec;36(21):6688-719. doi: 10.1093/nar/gkn668. Epub 2008 Oct 23. Nucleic Acids Res. 2008. PMID: 18948295 Free PMC article. Review.
Cited by
-
Interkingdom gene transfer of a hybrid NPS/PKS from bacteria to filamentous Ascomycota.PLoS One. 2011;6(11):e28231. doi: 10.1371/journal.pone.0028231. Epub 2011 Nov 29. PLoS One. 2011. PMID: 22140558 Free PMC article.
-
Transfer of DNA from Bacteria to Eukaryotes.mBio. 2016 Jul 12;7(4):e00863-16. doi: 10.1128/mBio.00863-16. mBio. 2016. PMID: 27406565 Free PMC article. Review.
-
DarkHorse: a method for genome-wide prediction of horizontal gene transfer.Genome Biol. 2007;8(2):R16. doi: 10.1186/gb-2007-8-2-r16. Genome Biol. 2007. PMID: 17274820 Free PMC article.
-
How big is the iceberg of which organellar genes in nuclear genomes are but the tip?Philos Trans R Soc Lond B Biol Sci. 2003 Jan 29;358(1429):39-57; discussion 57-8. doi: 10.1098/rstb.2002.1185. Philos Trans R Soc Lond B Biol Sci. 2003. PMID: 12594917 Free PMC article. Review.
-
Accurate localization of the integration sites of two genomic islands at single-nucleotide resolution in the genome of Bacillus cereus ATCC 10987.Comp Funct Genomics. 2008;2008:451930. doi: 10.1155/2008/451930. Comp Funct Genomics. 2008. PMID: 18464912 Free PMC article.