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. 2000 Nov;16(11):1048-9.
doi: 10.1093/bioinformatics/16.11.1048.

VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL

P Kersey  1 , H Hermjakob, R Apweiler
Affiliations

VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL

P Kersey et al. Bioinformatics. 2000 Nov.

Abstract

The program varsplic.pl uses information present in the SWISS-PROT and TrEMBL databases to create new records for alternatively spliced isoforms. These new records can be used in similarity searches.

Availability: The program is available at ftp://ftp.ebi.ac.uk/pub/software/swissprot/, together with regularly updated output files.

Contact: pkersey@ebi.ac.uk

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