Fidelity of enzymatic ligation for DNA computing
- PMID: 11382365
- DOI: 10.1089/10665270050514963
Fidelity of enzymatic ligation for DNA computing
Abstract
We describe a convenient assay for rapid qualitative evaluation of hybridization/ligation fidelity. The approach uses randomized probe strands of DNA and restriction enzyme digestion after amplification of reaction products by the polymerase chain reaction (PCR). We report ligation efficiencies and fidelities of two DNA ligases, T4 DNA ligase and Thermus aquaticus (Taq) DNA ligase, over a range of temperatures.
Similar articles
-
Optimal conditions to use Pfu exo(-) DNA polymerase for highly efficient ligation-mediated polymerase chain reaction protocols.Nucleic Acids Res. 2001 Aug 15;29(16):E83. doi: 10.1093/nar/29.16.e83. Nucleic Acids Res. 2001. PMID: 11504891 Free PMC article.
-
DNA ligases from thermophilic bacteria enhance PCR amplification of long DNA sequences.Biochemistry (Mosc). 2009 May;74(5):557-61. doi: 10.1134/s0006297909050113. Biochemistry (Mosc). 2009. PMID: 19538130
-
DNA-Binding Domain of DNA Ligase from the Thermophilic Archaeon Pyrococcus abyssi: Improving Long-Range PCR and Neutralization of Heparin's Inhibitory Effect.Appl Biochem Biotechnol. 2015 Aug;176(7):1859-69. doi: 10.1007/s12010-015-1683-2. Epub 2015 May 31. Appl Biochem Biotechnol. 2015. PMID: 26026263
-
Why Johnny can't clone: Common pitfalls and not so common solutions.Biotechniques. 2015 Sep 1;59(3):IV-XIII. doi: 10.2144/000114324. eCollection 2015 Sep. Biotechniques. 2015. PMID: 26345511 Review.
-
Analysis of genes, transcripts, and proteins via DNA ligation.Annu Rev Anal Chem (Palo Alto Calif). 2009;2:215-39. doi: 10.1146/annurev-anchem-060908-155239. Annu Rev Anal Chem (Palo Alto Calif). 2009. PMID: 20636060 Review.
Cited by
-
Molecular analysis of meso- and thermophilic microbiota associated with anaerobic biowaste degradation.BMC Microbiol. 2012 Jun 22;12:121. doi: 10.1186/1471-2180-12-121. BMC Microbiol. 2012. PMID: 22727142 Free PMC article.
-
Increasing the efficiency of SAGE adaptor ligation by directed ligation chemistry.Nucleic Acids Res. 2004 Jul 6;32(12):e96. doi: 10.1093/nar/gnh082. Nucleic Acids Res. 2004. PMID: 15247329 Free PMC article.
-
RNA sequencing: advances, challenges and opportunities.Nat Rev Genet. 2011 Feb;12(2):87-98. doi: 10.1038/nrg2934. Epub 2010 Dec 30. Nat Rev Genet. 2011. PMID: 21191423 Free PMC article. Review.
-
Single-molecule direct RNA sequencing without cDNA synthesis.Wiley Interdiscip Rev RNA. 2011 Jul-Aug;2(4):565-70. doi: 10.1002/wrna.84. Epub 2011 Mar 14. Wiley Interdiscip Rev RNA. 2011. PMID: 21957044 Free PMC article. Review.
-
RNA-Seq technology and its application in fish transcriptomics.OMICS. 2014 Feb;18(2):98-110. doi: 10.1089/omi.2013.0110. Epub 2013 Dec 31. OMICS. 2014. PMID: 24380445 Free PMC article. Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources