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. 2001 Aug;17(8):744-5.
doi: 10.1093/bioinformatics/17.8.744.

Multi-query sequence BLAST output examination with MuSeqBox

L Xing  1 , V Brendel
Affiliations

Multi-query sequence BLAST output examination with MuSeqBox

L Xing et al. Bioinformatics. 2001 Aug.

Abstract

Summary: MuSeqBox is a program to parse BLAST output and store attributes of BLAST hits in tabular form. The user can apply a number of selection criteria to filter out hits with particular attributes. MuSeqBox provides a powerful annotation tool for large sets of query sequences that are simultaneously compared against a database with any of the standard stand-alone or network-client BLAST programs. We discuss such application to the problem of annotation and analysis of EST collections.

Availability: The program was written in standard C++ and is freely available to noncommercial users by request from the authors. The program is also available over the web at http://bioinformatics.iastate.edu/bioinformatics2go/mb/MuSeqBox.html.

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