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. 2002 Jan 1;30(1):56-8.
doi: 10.1093/nar/30.1.56.

The EcoCyc Database

Peter D Karp  1 , Monica Riley, Milton Saier, Ian T Paulsen, Julio Collado-Vides, Suzanne M Paley, Alida Pellegrini-Toole, César Bonavides, Socorro Gama-Castro
Affiliations

The EcoCyc Database

Peter D Karp et al. Nucleic Acids Res. .

Abstract

EcoCyc is an organism-specific pathway/genome database that describes the metabolic and signal-transduction pathways of Escherichia coli, its enzymes, its transport proteins and its mechanisms of transcriptional control of gene expression. EcoCyc is queried using the Pathway Tools graphical user interface, which provides a wide variety of query operations and visualization tools. EcoCyc is available at http://ecocyc.org/.

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References

    1. Karp P.D. (2001) Pathway databases: a case study in computational symbolic theories. Science, 293, 2040–2044. - PubMed
    1. Karp P. and Paley,S. (1996) Integrated access to metabolic and genomic data. J. Comp. Biol., 3, 191–212. - PubMed
    1. Karp P.D., Krummenacker,M., Paley,S. and Wagg,J. (1999) Integrated pathway/genome databases and their role in drug discovery. Trends Biotechnol., 17, 275–281. - PubMed
    1. Karp P.D., Chaudhri,V.C. and Paley,S.M. (1999) A collaborative environment for authoring large knowledge bases. J. Intell. Inf. Syst., 13, 155–194.
    1. Salgado H., Santos-Zavaleta,A., Gama-Castro,S., Millan-Zarate,D., Diaz-Peredo,E., Sanchez-Solano,F., Pérez-Rueda,E., Bonavides-Martinez,C. and Collado-Vides,J. (2001) RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12. Nucleic Acids Res., 29, 72–74. - PMC - PubMed

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