Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2002 Jan 1;30(1):116-8.
doi: 10.1093/nar/30.1.116.

FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones

Hidemasa Bono  1 , Takeya Kasukawa, Masaaki Furuno, Yoshihide Hayashizaki, Yasushi Okazaki
Affiliations

FANTOM DB: database of Functional Annotation of RIKEN Mouse cDNA Clones

Hidemasa Bono et al. Nucleic Acids Res. .

Abstract

FANTOM DB, the database of Functional Annotation of RIKEN Mouse cDNA Clones, is designed to store sequence information of RIKEN full-length enriched mouse cDNA clones, graphical views of sequence analysis results, curated functional annotation information and additional descriptions, including Gene Ontology terms. RIKEN's Mouse Gene Encyclopedia Project aims to collect full-length enriched cDNA clones from various mouse tissues, determine the full-length nucleotide sequences, infer their chromosomal locations by computer and characterize gene expression patterns. FANTOM DB has been developed to facilitate this work and to facilitate functional genomic studies such as positional candidate cloning, cDNA microarrays and protein interaction analyses. FANTOM DB contains 21 076 full-length cDNA sequences with rich functional annotations and is publicly available. FANTOM DB thus provides curated functional annotation to RIKEN full-length enriched mouse clones, and has links to other public resources. FANTOM DB can be accessed at http://fantom.gsc.riken.go.jp/db/.

PubMed Disclaimer

Figures

Figure 1
Figure 1
A search result page containing three frames is shown. The top frame is the summary field, with links to DNA and amino acid sequences. The middle frame is the annotation field, where functional annotation of a cDNA is described. The lower frame is the reference field, which shows sequence analysis results and source information. The right windows show alignments with SPTR-nrdb (upper) and Pfam (lower). The alignment windows appear when the ‘align’ buttons in the reference frame are selected. Links in the reference and annotation frames take users to MGD, InterPro, LocusLink, GenPept, EGAD_HT, TIGR-MGI (TIGR-Mouse Gene Index), DDBJ, GenBank, EMBL, NCBI-nr, PIR (Protein Information Resource), UniGene and UTRdb (Untranslated Region database, http://bighost.area.ba.cnr.it/BIG/UTRHome/). The reference field also has links to Mapping (http://www.gsc.riken.go.jp/e/FANTOM/map/) and Superfamily (http://stash.mrc-lmb.cam.ac.uk/SUPERFAMILY/).
See this image and copyright information in PMC

References

    1. Quackenbush J. (2000) Viva la revolution! A report from the FANTOM meeting. Nature Genet., 26, 255–256. - PubMed
    1. The RIKEN Genome Exploration Research Group Phase II Team and The FANTOM Consortium (2001) Functional annotation of a full-length mouse cDNA collection. Nature, 409, 685–690. - PubMed
    1. Ashburner M., Ball,C.A., Blake,J.A., Botstein,D., Butler,H., Cherry,J.M., Davis,A.P., Dolinski,K., Dwight,S.S., Eppig,J.T. et al. (2000) Gene Ontology: tool for the unification of biology. The Gene Ontology Consortium. Nature Genet., 25, 25–29. - PMC - PubMed
    1. Bateman A., Birney,E., Durbin,R., Eddy,S.R., Howe,K.L. and Sonnhammer,E.L. (2000) The Pfam protein families database. Nucleic Acids Res., 28, 263–266. Updated article in this issue: Nucleic Acids Res. (2002), 30, 276–280. - PMC - PubMed

Publication types

Substances