Issues in representation of molecular structure the development of molecular connectivity
- PMID: 11760002
- DOI: 10.1016/s1093-3263(01)00097-3
Issues in representation of molecular structure the development of molecular connectivity
Abstract
Significant issues in the representation of molecular structure and the development of the molecular connectivity paradigm are presented. In the molecular connectivity paradigm, molecular structure is represented directly. Kier and Hall developed the method by creating ways to encode electronic information based on the paradigm developed from the Randić branching index. The simple and valence delta values were created to encode atomic and valence-state electronic information through counts of sigma, pi, and lone pair electrons. A family of indices was created to provide a wide range of structure information. The key aspects of the development are presented and discussed in such a way as to reveal, at least in part, the imaginative thinking involved in the process. Possible future roles for molecular connectivity chi indices are discussed.
Similar articles
-
Development of structure information from molecular topology for modeling chemical and biological properties: a tribute to the creativity of Lemont Burwell Kier on his 80th Birthday.Curr Comput Aided Drug Des. 2012 Jun;8(2):93-106. doi: 10.2174/157340912800492393. Curr Comput Aided Drug Des. 2012. PMID: 22497468 Review.
-
Overall connectivity--a next generation molecular connectivity.J Mol Graph Model. 2001;20(1):65-75. doi: 10.1016/s1093-3263(01)00101-2. J Mol Graph Model. 2001. PMID: 11760004 Review.
-
Prediction of plasma protein binding of drugs using Kier-Hall valence connectivity indices and 4D-fingerprint molecular similarity analyses.J Comput Aided Mol Des. 2005 Aug;19(8):567-83. doi: 10.1007/s10822-005-9012-4. Epub 2005 Nov 3. J Comput Aided Mol Des. 2005. PMID: 16267692
-
[Relationship study between the retention behavior on diverse gas chromatographic stationary phases and molecular structure information connectivity indices of PCDFs].Se Pu. 2002 Jan;20(1):6-11. Se Pu. 2002. PMID: 12541609 Chinese.
-
Response surface analysis of bioconcentration by chlorinated organics using molecular connectivity.SAR QSAR Environ Res. 1994;2(3):181-91. doi: 10.1080/10629369408029902. SAR QSAR Environ Res. 1994. PMID: 8790645
Cited by
-
QSAR studies for prediction of cross-β sheet aggregate binding affinity and selectivity.Bioorg Med Chem. 2012 Feb 15;20(4):1434-41. doi: 10.1016/j.bmc.2011.12.062. Epub 2012 Jan 12. Bioorg Med Chem. 2012. PMID: 22285571 Free PMC article.
-
QSRR Models for Kováts' Retention Indices of a Variety of Volatile Organic Compounds on Polar and Apolar GC Stationary Phases Using Molecular Connectivity Indexes.Chromatographia. 2010 Nov;72(9-10):893-903. doi: 10.1365/s10337-010-1741-4. Epub 2010 Sep 9. Chromatographia. 2010. PMID: 21088689 Free PMC article.
-
QSAR modeling: where have you been? Where are you going to?J Med Chem. 2014 Jun 26;57(12):4977-5010. doi: 10.1021/jm4004285. Epub 2014 Jan 6. J Med Chem. 2014. PMID: 24351051 Free PMC article.
-
A novel automated lazy learning QSAR (ALL-QSAR) approach: method development, applications, and virtual screening of chemical databases using validated ALL-QSAR models.J Chem Inf Model. 2006 Sep-Oct;46(5):1984-95. doi: 10.1021/ci060132x. J Chem Inf Model. 2006. PMID: 16995729 Free PMC article.
-
CE50: quantifying collision induced dissociation energy for small molecule characterization and identification.J Am Soc Mass Spectrom. 2009 Sep;20(9):1759-67. doi: 10.1016/j.jasms.2009.06.002. Epub 2009 Jun 21. J Am Soc Mass Spectrom. 2009. PMID: 19616966
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Research Materials
Miscellaneous