HLA Class I typing of volunteers for a bone marrow registry: QC analysis by DNA-based methodology identifies serological typing discrepancies in the assignment of HLA-A and B antigens
- PMID: 12074711
- DOI: 10.1034/j.1399-0039.2002.590305.x
HLA Class I typing of volunteers for a bone marrow registry: QC analysis by DNA-based methodology identifies serological typing discrepancies in the assignment of HLA-A and B antigens
Abstract
Until recently, the majority of newly recruited volunteer donors were typed for HLA-A and -B by serology onto the National Marrow Donor Program Registry. Quality control of this serological typing performed by contracted laboratories was carried out by retesting approximately 1% of each laboratory's test volume utilizing DNA-based techniques (SSOP). The criteria used for selection included samples presumed to be homozygotes, samples with split antigen specificities and samples with antigens considered to be difficult to define. Out of 1983 samples analyzed, 156 HLA-A (3.9%) and 265 HLA-B (6.7%) locus discrepancies were identified. Review of these discrepancies by both the serological and QC laboratory revealed that the majority of discrepancies were due to errors in serological typing. Serological discrepancies were categorized as follows: blank antigens identified (36.8%) and misassignments (63.2%). Misassignments were defined as either the incorrect assignment of antigens within a group ("wrong split"), or a complete misassignment. Antigens reported as blanks most frequently belonged to the A19 and A28 groups and to the B70, 46 and 40 groups. The most frequent misassignments within groups were the A19 and A10 groups, and the B40 and B15 groups. Other HLA-A misassignments included A2 vs A28 or A2 vs A69, while other HLA-B misassignments included B35 and B70. This QC analysis showed that serological typing of class I antigens for the purposes of NMDP registry typing is prone to a significant error rate. Careful evaluation and selection of contracted laboratories by the NMDP suggests methodological limitations rather than poor performance as the main cause of these observations.
Similar articles
-
Accurate typing of HLA-A antigens and analysis of serological deficiencies.Tissue Antigens. 1997 Oct;50(4):380-6. doi: 10.1111/j.1399-0039.1997.tb02891.x. Tissue Antigens. 1997. PMID: 9349623
-
Analysis of HLA-A and -B serologic typing of bone marrow registry donors using polymerase chain reaction with sequence-specific oligonucleotide probes and DNA sequencing.Tissue Antigens. 1997 Oct;50(4):366-71. doi: 10.1111/j.1399-0039.1997.tb02889.x. Tissue Antigens. 1997. PMID: 9349621
-
HLA class I DNA typing of 215 "HLA-A, -B, -DR zero mismatched" kidney transplants.Tissue Antigens. 1997 Oct;50(4):355-8. doi: 10.1111/j.1399-0039.1997.tb02887.x. Tissue Antigens. 1997. PMID: 9349619
-
High and intermediate resolution DNA typing systems for class I HLA-A, B, C genes by hybridization with sequence-specific oligonucleotide probes (SSOP).Rev Immunogenet. 1999;1(2):177-208. Rev Immunogenet. 1999. PMID: 11253946 Review.
-
International Cell Exchange, 1994.Clin Transpl. 1994:467-88. Clin Transpl. 1994. PMID: 7547576 Review.
Cited by
-
Evaluation of computational programs to predict HLA genotypes from genomic sequencing data.Brief Bioinform. 2018 Mar 1;19(2):179-187. doi: 10.1093/bib/bbw097. Brief Bioinform. 2018. PMID: 27802932 Free PMC article.
-
HLA-B51/B5 and the risk of Behçet's disease: a systematic review and meta-analysis of case-control genetic association studies.Arthritis Rheum. 2009 Oct 15;61(10):1287-96. doi: 10.1002/art.24642. Arthritis Rheum. 2009. PMID: 19790126 Free PMC article.
-
HLA-A amino acid polymorphism and delayed kidney allograft function.Proc Natl Acad Sci U S A. 2008 Dec 2;105(48):18883-8. doi: 10.1073/pnas.0810308105. Epub 2008 Nov 24. Proc Natl Acad Sci U S A. 2008. PMID: 19033208 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Research Materials