doi: 10.1093/bioinformatics/18.10.1396.
GENOTRACE: cDNA-based local GENOme assembly from TRACE archives
Affiliations
- PMID: 12376385
- DOI: 10.1093/bioinformatics/18.10.1396
Item in Clipboard
GENOTRACE: cDNA-based local GENOme assembly from TRACE archives
Bioinformatics.
2002 Oct.
Abstract
GENOTRACE identifies the genomic organization for a cDNA using raw data from genome sequencing projects in progress (trace archives). Local genomic contigs are generated, allowing for example the design of PCR primers in intronic sequences to amplify coding regions of a gene, needed for example for mutation or SNP detection.
Availability: The package and examples of output files can be downloaded from http://rat.niob.knaw.nl/GENOTRACE
Similar articles
-
TERMINUS--Telomeric End-Read Mining IN Unassembled Sequences.Bioinformatics. 2005 Apr 15;21(8):1695-8. doi: 10.1093/bioinformatics/bti181. Epub 2004 Dec 7. Bioinformatics. 2005. PMID: 15585532
-
Genquire: genome annotation browser/editor.Bioinformatics. 2002 Oct;18(10):1398-9. doi: 10.1093/bioinformatics/18.10.1398. Bioinformatics. 2002. PMID: 12376386
-
Reading the fine print of the human genome.IEEE Eng Med Biol Mag. 2003 Mar-Apr;22(2):105-8. doi: 10.1109/memb.2003.1195706. IEEE Eng Med Biol Mag. 2003. PMID: 12733468 No abstract available.
-
Automated querying of genome databases.PLoS Comput Biol. 2007 Jan 26;3(1):e1. doi: 10.1371/journal.pcbi.0030001. PLoS Comput Biol. 2007. PMID: 17257048 Free PMC article. Review. No abstract available.
-
Genomes, genomes everywhere--but where to browse?Brief Bioinform. 2004 Dec;5(4):365-9. doi: 10.1093/bib/5.4.365. Brief Bioinform. 2004. PMID: 15606973 Review. No abstract available.
Cited by
-
PIMS sequencing extension: a laboratory information management system for DNA sequencing facilities.BMC Res Notes. 2011 Mar 7;4:48. doi: 10.1186/1756-0500-4-48. BMC Res Notes. 2011. PMID: 21385349 Free PMC article.
-
Current awareness on comparative and functional genomics.Comp Funct Genomics. 2003;4(2):277-84. doi: 10.1002/cfg.227. Comp Funct Genomics. 2003. PMID: 18629117 Free PMC article. No abstract available.
-
Efficient target-selected mutagenesis in zebrafish.Genome Res. 2003 Dec;13(12):2700-7. doi: 10.1101/gr.1725103. Epub 2003 Nov 12. Genome Res. 2003. PMID: 14613981 Free PMC article.
-
Single nucleotide polymorphisms associated with rat expressed sequences.Genome Res. 2004 Jul;14(7):1438-43. doi: 10.1101/gr.2154304. Genome Res. 2004. PMID: 15231757 Free PMC article.
-
Tracembler--software for in-silico chromosome walking in unassembled genomes.BMC Bioinformatics. 2007 May 9;8:151. doi: 10.1186/1471-2105-8-151. BMC Bioinformatics. 2007. PMID: 17490482 Free PMC article.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
