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. 2002 Nov;18(11):1544-5.
doi: 10.1093/bioinformatics/18.11.1544.

Poxvirus Orthologous Clusters (POCs)

Angelika Ehlers  1 , John Osborne, Stephanie Slack, Rachel L Roper, Chris Upton
Affiliations

Poxvirus Orthologous Clusters (POCs)

Angelika Ehlers et al. Bioinformatics. 2002 Nov.

Abstract

Poxvirus Orthologous Clusters (POCs) is a JAVA client-server application which accesses an updated database containing all complete poxvirus genomes; it automatically groups orthologous genes into families based on BLASTP scores for assessment by a human database curator. POCs has a user-friendly interface permitting complex SQL queries to retrieve interesting groups of DNA and protein sequences as well as gene families for subsequent interrogation by a variety of integrated tools: BLASTP, BLASTX, TBLASTN, Jalview (multiple alignment), Dotlet (Dotplot), Laj (local alignment), and NAP (nucleotide to amino acid alignment).

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