doi: 10.1093/bioinformatics/19.1.151.
MAVG: locating non-overlapping maximum average segments in a given sequence
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- PMID: 12499306
- DOI: 10.1093/bioinformatics/19.1.151
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MAVG: locating non-overlapping maximum average segments in a given sequence
Bioinformatics.
2003 Jan.
Abstract
Summary: MAVG is a software tool for finding k non-overlapping maximum-average segments that are sufficiently long in a given sequence of real numbers, for any k > 0. It has applications in several areas of biomolecular sequence analysis including locating GC-rich regions and CpG islands in a genomic sequence, and annotating multiple sequence alignments.
Availability: http://iubio.bio.indiana.edu/soft/molbio/pattern/cpg_islands/.
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