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. 2003 Jan;19(1):151-2.
doi: 10.1093/bioinformatics/19.1.151.

MAVG: locating non-overlapping maximum average segments in a given sequence

Yaw-Ling Lin  1 , Xiaoqiu Huang, Tao Jiang, Kun-Mao Chao
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MAVG: locating non-overlapping maximum average segments in a given sequence

Yaw-Ling Lin et al. Bioinformatics. 2003 Jan.

Abstract

Summary: MAVG is a software tool for finding k non-overlapping maximum-average segments that are sufficiently long in a given sequence of real numbers, for any k > 0. It has applications in several areas of biomolecular sequence analysis including locating GC-rich regions and CpG islands in a genomic sequence, and annotating multiple sequence alignments.

Availability: http://iubio.bio.indiana.edu/soft/molbio/pattern/cpg_islands/.

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