RECODE 2003
- PMID: 12519954
- PMCID: PMC165471
- DOI: 10.1093/nar/gkg024
RECODE 2003
Abstract
The RECODE database is a compilation of translational recoding events (programmed ribosomal frameshifting, codon redefinition and translational bypass). The database provides information about the genes utilizing these events for their expression, recoding sites, stimulatory sequences and other relevant information. The Database is freely available at http://recode.genetics.utah.edu/.
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References
-
- Gesteland R.F. and Atkins,J.F. (1996) Recoding: dynamic reprogramming of translation. Annu. Rev. Biochem., 65, 741–768. - PubMed
-
- Brierley I. and Pennell,S. (2001) Structure and function of the stimulatory RNAs involved in programmed eukaryotic −1 ribosomal frameshifting. Cold Spring Harb. Symp. Quant. Biol., 66, 233–248. - PubMed
-
- Baranov P.V., Gesteland,R.F. and Atkins,J.F. (2002) Recoding: translational bifurcations in gene expression. Gene, 286, 187–201. - PubMed