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. 2003 Jan 1;31(1):489-91.
doi: 10.1093/nar/gkg068.

The Protein Data Bank and structural genomics

Affiliations

The Protein Data Bank and structural genomics

John Westbrook et al. Nucleic Acids Res. .

Abstract

The Protein Data Bank (PDB; http://www.pdb.org/) continues to be actively involved in various aspects of the informatics of structural genomics projects--developing and maintaining the Target Registration Database (TargetDB), organizing data dictionaries that will define the specification for the exchange and deposition of data with the structural genomics centers and creating software tools to capture data from standard structure determination applications.

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Figures

Figure 1
Figure 1
Schematic diagram of structure determination data pipeline.

References

    1. Berman H.M., Westbrook,J., Feng,Z., Gilliland,G., Bhat,T.N., Weissig,H., Shindyalov,I.N. and Bourne,P.E. (2000) The Protein Data Bank. Nucleic Acids Res., 28, 235–242. - PMC - PubMed
    1. Bernstein F.C., Koetzle,T.F., Williams,G.J., Meyer,E.E., Brice,M.D., Rodgers,J.R., Kennard,O., Shimanouchi,T. and Tasumi,M. (1977) Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol., 112, 535–542. - PubMed
    1. Berman H.M., Bhat,T.N., Bourne,P.E., Feng,Z., Gilliland,G., Weissig,H. and Westbrook,J. (2000) The Protein Data Bank and the challenge of structural genomics. Nature Struct. Biol., 7, 957–959. - PubMed
    1. Brenner S.E., Barken,D. and Levitt,M. (1999) The Presage database for structural genomics. Nucleic Acids Res., 27, 251–253. - PMC - PubMed
    1. Task Force on Target Tracking (2001) Task Force Reports from the Second International Structural Genomics Meeting. Airlie, VA. http://www.nigms.nih.gov/news/reports/airlie_tasks.html.

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