Molecular diversity among marine picophytoplankton as revealed by psbA analyses
- PMID: 12588300
- DOI: 10.1046/j.1462-2920.2003.00403.x
Molecular diversity among marine picophytoplankton as revealed by psbA analyses
Abstract
Photosynthetic microorganisms play a crucial role in the marine environment. In vast areas of the oceans, marine primary productivity is performed by cells smaller than 2-3 micro m (picoplankton). Here, we report on molecular analyses of the conserved photosynthetic psbA gene (coding for protein D1 of photosystem II reaction centre) as a diversity indicator of naturally occurring marine oxygenic picophytoplankton. The psbA genes proved to be good indicators of the presence of a wide variety of photosynthetic marine microbial groups, including new cyanobacterial groups and eukaryotic algae (prasinophytes). Furthermore, using environmental bacterial artificial chromosome (BAC) libraries, we were able to correlate psbA genes with small subunit rRNAs and, therefore, to confirm their phylogenetic affiliation.
Similar articles
-
The use of DGGE analyses to explore eastern Mediterranean and Red Sea marine picophytoplankton assemblages.Environ Microbiol. 2004 May;6(5):528-34. doi: 10.1111/j.1462-2920.2004.00599.x. Environ Microbiol. 2004. PMID: 15049926
-
Community-level analysis of phototrophy: psbA Gene Diversity.Methods Enzymol. 2005;397:372-80. doi: 10.1016/S0076-6879(05)97022-5. Methods Enzymol. 2005. PMID: 16260303
-
Diversity of active marine picoeukaryotes in the Eastern Mediterranean Sea unveiled using photosystem-II psbA transcripts.ISME J. 2010 Aug;4(8):1044-52. doi: 10.1038/ismej.2010.25. Epub 2010 Mar 18. ISME J. 2010. PMID: 20237514
-
Strategies for psbA gene expression in cyanobacteria, green algae and higher plants: from transcription to PSII repair.Biochim Biophys Acta. 2012 Jan;1817(1):247-57. doi: 10.1016/j.bbabio.2011.04.011. Epub 2011 May 2. Biochim Biophys Acta. 2012. PMID: 21565160 Review.
-
Cyanophage infection and photoinhibition in marine cyanobacteria.Res Microbiol. 2004 Nov;155(9):720-5. doi: 10.1016/j.resmic.2004.06.002. Res Microbiol. 2004. PMID: 15501648 Review.
Cited by
-
Metabolic Genes within Cyanophage Genomes: Implications for Diversity and Evolution.Genes (Basel). 2016 Sep 29;7(10):80. doi: 10.3390/genes7100080. Genes (Basel). 2016. PMID: 27690109 Free PMC article. Review.
-
The P-SSP7 cyanophage has a linear genome with direct terminal repeats.PLoS One. 2012;7(5):e36710. doi: 10.1371/journal.pone.0036710. Epub 2012 May 11. PLoS One. 2012. PMID: 22606283 Free PMC article.
-
A robust approach to estimate relative phytoplankton cell abundances from metagenomes.Mol Ecol Resour. 2023 Jan;23(1):16-40. doi: 10.1111/1755-0998.13592. Epub 2022 Feb 16. Mol Ecol Resour. 2023. PMID: 35108459 Free PMC article.
-
Transfer of photosynthesis genes to and from Prochlorococcus viruses.Proc Natl Acad Sci U S A. 2004 Jul 27;101(30):11013-8. doi: 10.1073/pnas.0401526101. Epub 2004 Jul 15. Proc Natl Acad Sci U S A. 2004. PMID: 15256601 Free PMC article.
-
Contrasting community versus population-based estimates of grazing and virus-induced mortality of phytoplankton.Microb Ecol. 2012 Jul;64(1):25-38. doi: 10.1007/s00248-012-0019-9. Epub 2012 Feb 11. Microb Ecol. 2012. PMID: 22327271
Publication types
MeSH terms
Substances
Associated data
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
LinkOut - more resources
Full Text Sources