Comparing the base usage frequency between bacteria DNA double strand
- PMID: 12776609
Comparing the base usage frequency between bacteria DNA double strand
Abstract
During the Evolution, effected by select pressure or nature mutation, the compositions of bacteria genomes is various. And many experiences prove that the genes between leading strand and lagging strand is distinctly in copy, transcription and repair. Some scholars presume that the bases distribution is difference between the two strand, to verify the guess, we using the technology of bioinformatics, compare the base usage between the DNA double strand in 17 species bacteria. The result show: 1. there is same bases usage frequency in coding sequence between leading strand and lagging strand 2. There also same bases usage frequency in first codon, second codon and third codon. It suggest that there is a equilibrium between the two strand by the effect of select pressure and nature mutation.
Similar articles
-
Nucleotide compositional asymmetry between the leading and lagging strands of eubacterial genomes.Res Microbiol. 2010 Dec;161(10):838-46. doi: 10.1016/j.resmic.2010.09.015. Epub 2010 Sep 22. Res Microbiol. 2010. PMID: 20868744
-
Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria.J Appl Genet. 2003;44(2):235-61. J Appl Genet. 2003. PMID: 12817570
-
Mutation and selection on the anticodon of tRNA genes in vertebrate mitochondrial genomes.Gene. 2005 Jan 17;345(1):13-20. doi: 10.1016/j.gene.2004.11.019. Epub 2004 Dec 19. Gene. 2005. PMID: 15716092
-
The layout of a bacterial genome.FEBS Lett. 2012 Jul 16;586(15):2043-8. doi: 10.1016/j.febslet.2012.03.051. Epub 2012 Mar 31. FEBS Lett. 2012. PMID: 22483986 Review.
-
Strand asymmetries in DNA evolution.Trends Genet. 1997 Jun;13(6):240-5. doi: 10.1016/S0168-9525(97)01118-9. Trends Genet. 1997. PMID: 9196330 Review.