doi: 10.1093/bioinformatics/btg141.
Calculation of helix packing angles in protein structures
Affiliations
- PMID: 12835278
- DOI: 10.1093/bioinformatics/btg141
Item in Clipboard
Calculation of helix packing angles in protein structures
Bioinformatics.
.
Abstract
Software is presented for the calculation of packing angles and geometry of helical secondary structure elements in protein structures.
Availability: C language source code and documentation is available from http://www.bioinformatics.leeds.ac.uk.
Similar articles
-
QHELIX: a computational tool for the improved measurement of inter-helical angles in proteins.Protein J. 2007 Dec;26(8):556-61. doi: 10.1007/s10930-007-9097-9. Protein J. 2007. PMID: 17805951
-
Protein structure topological comparison, discovery and matching service.Bioinformatics. 2005 May 15;21(10):2537-8. doi: 10.1093/bioinformatics/bti331. Epub 2005 Mar 1. Bioinformatics. 2005. PMID: 15741246
-
STARS: statistics on inter-atomic distances and torsion angles in protein secondary structures.Bioinformatics. 2005 Jun 15;21(12):2925-6. doi: 10.1093/bioinformatics/bti437. Epub 2005 Apr 12. Bioinformatics. 2005. PMID: 15827078
-
De novo design of proteins--what are the rules?Chem Rev. 2001 Oct;101(10):3153-63. doi: 10.1021/cr0000473. Chem Rev. 2001. PMID: 11710066 Review. No abstract available.
-
An analysis of packing in the protein folding problem.Q Rev Biophys. 1993 Nov;26(4):423-98. doi: 10.1017/s0033583500002845. Q Rev Biophys. 1993. PMID: 8058892 Review. No abstract available.
Cited by
-
A periplasmic coiled-coil interface underlying TolC recruitment and the assembly of bacterial drug efflux pumps.Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4612-7. doi: 10.1073/pnas.0610160104. Epub 2007 Mar 5. Proc Natl Acad Sci U S A. 2007. PMID: 17360572 Free PMC article.
-
Membrane domain structures of three classes of histidine kinase receptors by cell-free expression and rapid NMR analysis.Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10902-7. doi: 10.1073/pnas.1001656107. Epub 2010 May 24. Proc Natl Acad Sci U S A. 2010. PMID: 20498088 Free PMC article.
-
Analysis of positive and negative allosteric modulation in metabotropic glutamate receptors 4 and 5 with a dual ligand.Sci Rep. 2017 Jul 10;7(1):4944. doi: 10.1038/s41598-017-05095-5. Sci Rep. 2017. PMID: 28694498 Free PMC article.
-
Structural characterization of an intrinsically disordered protein complex using integrated small-angle neutron scattering and computing.Protein Sci. 2023 Oct;32(10):e4772. doi: 10.1002/pro.4772. Protein Sci. 2023. PMID: 37646172 Free PMC article.
-
TOPS: an enhanced database of protein structural topology.Nucleic Acids Res. 2004 Jan 1;32(Database issue):D251-4. doi: 10.1093/nar/gkh060. Nucleic Acids Res. 2004. PMID: 14681405 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
