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. 2003 Jul 18;301(5631):376-9.
doi: 10.1126/science.1081288.

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

Rice Full-Length cDNA Consortium  1 ; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Shoshi Kikuchi, Kouji Satoh, Toshifumi Nagata, Nobuyuki Kawagashira, Koji Doi, Naoki Kishimoto, Junshi Yazaki, Masahiro Ishikawa, Hitomi Yamada, Hisako Ooka, Isamu Hotta, Keiichi Kojima, Takahiro Namiki, Eisuke Ohneda, Wataru Yahagi, Kohji Suzuki, Chao Jie Li, Kenji Ohtsuki, Toru Shishiki; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; Yasuhiro Otomo, Kazuo Murakami, Yoshiharu Iida, Sumio Sugano, Tatsuto Fujimura, Yutaka Suzuki, Yuki Tsunoda, Takashi Kurosaki, Takeko Kodama, Hiromi Masuda, Michie Kobayashi, Quihong Xie, Min Lu, Ryuya Narikawa, Akio Sugiyama, Kouichi Mizuno, Satoko Yokomizo, Junko Niikura, Rieko Ikeda, Junya Ishibiki, Midori Kawamata, Akemi Yoshimura, Junichirou Miura, Takahiro Kusumegi, Mitsuru Oka, Risa Ryu, Mariko Ueda, Kenichi Matsubara; RIKEN; Jun Kawai, Piero Carninci, Jun Adachi, Katsunori Aizawa, Takahiro Arakawa, Shiro Fukuda, Ayako Hara, Wataru Hashizume, Norihito Hayatsu, Koichi Imotani, Yoshiyuki Ishii, Masayoshi Itoh, Ikuko Kagawa, Shinji Kondo, Hideaki Konno, Ai Miyazaki, Naoki Osato, Yoshimi Ota, Rintaro Saito, Daisuke Sasaki, Kenjiro Sato, Kazuhiro Shibata, Akira Shinagawa, Toshiyuki Shiraki, Masayasu Yoshino, Yoshihide Hayashizaki, Ayako Yasunishi
Affiliations

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

Rice Full-Length cDNA Consortium et al. Science. .

Erratum in

  • Science. 2003 Sep;301(5641):1849

Abstract

We collected and completely sequenced 28,469 full-length complementary DNA clones from Oryza sativa L. ssp. japonica cv. Nipponbare. Through homology searches of publicly available sequence data, we assigned tentative protein functions to 21,596 clones (75.86%). Mapping of the cDNA clones to genomic DNA revealed that there are 19,000 to 20,500 transcription units in the rice genome. Protein informatics analysis against the InterPro database revealed the existence of proteins presented in rice but not in Arabidopsis. Sixty-four percent of our cDNAs are homologous to Arabidopsis proteins.

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Comment in

  • How unique is the rice transcriptome?
    Wyrwicz LS, von Grotthuss M, Pas J, Rychlewski L. Wyrwicz LS, et al. Science. 2004 Jan 9;303(5655):168; author reply 168. doi: 10.1126/science.303.5655.168b. Science. 2004. PMID: 14715990 No abstract available.

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