Morphological and ITS1, 5.8S, and partial ITS2 ribosomal DNA sequence distinctions between two species Platygyra (Cnidaria: Scleractinia) from Hong Kong [corrected]
- PMID: 12913814
- DOI: 10.1007/s10126-002-0114-x
Morphological and ITS1, 5.8S, and partial ITS2 ribosomal DNA sequence distinctions between two species Platygyra (Cnidaria: Scleractinia) from Hong Kong [corrected]
Erratum in
- Mar Biotechnol (NY). 2004 Jan-Feb;6(1):104
Abstract
Two sympatric species of Platygyra have been identified from Hong Kong waters: i.e., P. sinensis and P. pini. The former has been further subdivided into 4 morphotypes based on colony growth form as follows: classic, encrusting, hillocky, and long-valley. Taxonomic confusion raised by overlapping morphological variations and frequent sympatric occurrences, however, has posed problems in relation to Platygyra ecology and population dynamics. This study attempted to differentiate Platygyra pini and morphotypes of P. sinensis by both morphological and ITS1, 5.8S, and partial ITS2 ribosomal DNA sequence analysis. Morphological data based on 9 skeletal characters were subjected to multivariate analysis. No clear groupings were obtained using a multidimensional scaling plot. Most parsimony analysis was conducted using either the rDNA data set including ITS1, 5.8S, and partial ITS2 or the ITS1 region only. Maximum parsimony (MP) and neighbor-joining (NJ) trees obtained from both data sets, clustered samples of P. sinensis and P. pini into 2 clades. The interspecific Kimura 2-parameter sequence divergence value (k2) obtained by the former rDNA data set was 14.275 +/- 0.507%, which is greater than the intraspecific values (1.239 +/- 1.147% for P. sinensis and 0.469 +/- 0.364% for P. pini), indicating that this marker of ITS1, 5.8S, and ITS2 contains substantially high levels of inherent diversity and is useful in resolving the problematic taxonomy of Platygyra.
Similar articles
-
Variation in the ribosomal internal transcribed spacers and 5.8S rDNA among five species of Acropora (Cnidaria; Scleractinia): patterns of variation consistent with reticulate evolution.Mol Biol Evol. 1997 May;14(5):465-73. doi: 10.1093/oxfordjournals.molbev.a025783. Mol Biol Evol. 1997. PMID: 9159924
-
Genetic diversity of nuclear ITS1-5.8S-ITS2 rDNA sequence in Clonorchis sinensis Cobbold, 1875 (Trematoda: Opisthorchidae) from the Russian Far East.Parasitol Int. 2012 Dec;61(4):664-74. doi: 10.1016/j.parint.2012.07.005. Epub 2012 Jul 21. Parasitol Int. 2012. PMID: 22824337
-
Sequence variability in internal transcribed spacers of nuclear ribosomal DNA among isolates of the oxyurid nematodes Syphacia obvelata and Aspiculuris tetraptera from mice reared in laboratories in China.J Helminthol. 2016 Jan;90(1):81-5. doi: 10.1017/S0022149X1400087X. J Helminthol. 2016. PMID: 26693888
-
Molecular characterisation of Sarcocystis bovifelis, Sarcocystis bovini n. sp., Sarcocystis hirsuta and Sarcocystis cruzi from cattle (Bos taurus) and Sarcocystis sinensis from water buffaloes (Bubalus bubalis).Parasitol Res. 2016 Apr;115(4):1473-92. doi: 10.1007/s00436-015-4881-5. Epub 2015 Dec 17. Parasitol Res. 2016. PMID: 26677095
-
Identification of endophytic fungi from Livistona chinensis based on morphology and rDNA sequences.New Phytol. 2000 Sep;147(3):617-630. doi: 10.1046/j.1469-8137.2000.00716.x. New Phytol. 2000. PMID: 33862946 Review.
Cited by
-
Cleaning up the 'Bigmessidae': molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae.BMC Evol Biol. 2011 Feb 7;11:37. doi: 10.1186/1471-2148-11-37. BMC Evol Biol. 2011. PMID: 21299898 Free PMC article.
-
Shape-shifting corals: molecular markers show morphology is evolutionarily plastic in Porites.BMC Evol Biol. 2009 Feb 24;9:45. doi: 10.1186/1471-2148-9-45. BMC Evol Biol. 2009. PMID: 19239678 Free PMC article.