Long-range correlations in nucleotide sequences
- PMID: 1301010
- DOI: 10.1038/356168a0
Long-range correlations in nucleotide sequences
Abstract
DNA sequences have been analysed using models, such as an n-step Markov chain, that incorporate the possibility of short-range nucleotide correlations. We propose here a method for studying the stochastic properties of nucleotide sequences by constructing a 1:1 map of the nucleotide sequence onto a walk, which we term a 'DNA walk'. We then use the mapping to provide a quantitative measure of the correlation between nucleotides over long distances along the DNA chain. Thus we uncover in the nucleotide sequence a remarkably long-range power law correlation that implies a new scale-invariant property of DNA. We find such long-range correlations in intron-containing genes and in nontranscribed regulatory DNA sequences, but not in complementary DNA sequences or intron-less genes.
Comment in
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Correlations in intronless DNA.Nature. 1992 Oct 29;359(6398):782. doi: 10.1038/359782a0. Nature. 1992. PMID: 1436053 No abstract available.
-
DNA correlations.Nature. 1992 Dec 17;360(6405):635-6. doi: 10.1038/360635b0. Nature. 1992. PMID: 1465125 No abstract available.
-
DNA correlations.Nature. 1992 Dec 17;360(6405):636. doi: 10.1038/360636a0. Nature. 1992. PMID: 1465126 No abstract available.
-
Uncorrelated DNA walks.Nature. 1992 Jun 11;357(6378):450. doi: 10.1038/357450a0. Nature. 1992. PMID: 1608445 No abstract available.
-
Long-range correlations in DNA.Nature. 1993 Jan 21;361(6409):212-3. doi: 10.1038/361212b0. Nature. 1993. PMID: 8423849 No abstract available.
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