Alleles of the rat T-cell receptor beta chain gene complex
- PMID: 1348495
- DOI: 10.1007/BF00189895
Alleles of the rat T-cell receptor beta chain gene complex
Abstract
Inbred rat strains provide a rich source of genetic diversity in immunologically relevant genes. We have characterized the alleles of one of these genes, encoding the rat T-cell receptor C beta 1 chain, by Southern blots and nucleic acid sequencing. The Cb1 gene segments from DA and LEW rats display complex allotypic variation: both coding and noncoding regions contain multiple nucleotide substitutions. In addition, there is a polymorphic insertion of a rat repetitive LINE element 3' to the coding region. The Cb1 alleles are one part of larger Tcrb haplotypes, containing V beta, D beta, and J beta elements; complete Cb1 genomic nucleotide sequences, and a partial list of the strain distribution of the two alleles, are described in this report.
Similar articles
-
Genetic differences in the T cell receptor alleles of LEW rats and their encephalomyelitis-resistant derivative, LER, and their impact on the inheritance of EAE resistance.Eur J Immunol. 1991 Sep;21(9):2033-41. doi: 10.1002/eji.1830210910. Eur J Immunol. 1991. PMID: 1716210
-
T cell receptor beta-chain genes in the rat. Availability and pattern of utilization of V gene segments differs from that in the mouse.J Immunol. 1989 Feb 1;142(3):1027-35. J Immunol. 1989. PMID: 2563271
-
A polymorphism of the rat T-cell receptor beta-chain variable gene 13 (BV13S1) correlates with the frequency of BV13S1-positive CD4 cells.Immunogenetics. 2000 Apr;51(4-5):296-305. doi: 10.1007/s002510050623. Immunogenetics. 2000. PMID: 10803842
-
Systematic study of human alpha beta T cell receptor V segments shows allelic variations resulting in a large number of distinct T cell receptor haplotypes.Eur J Immunol. 1993 Jun;23(6):1277-83. doi: 10.1002/eji.1830230613. Eur J Immunol. 1993. PMID: 8500523
-
Structure and diversity of rat T cell receptor alpha-chain genes.J Immunol. 1993 Mar 15;150(6):2295-304. J Immunol. 1993. PMID: 8095511
Cited by
-
Sequence and diversity of rat T-cell receptor alpha-chain-encoding genes.Immunogenetics. 1994;39(2):155-8. doi: 10.1007/BF00188620. Immunogenetics. 1994. PMID: 8276459 No abstract available.
-
Genetic map of 16 polymorphic markers forming three linkage groups assigned to rat chromosome 4.Mamm Genome. 1995 Jul;6(7):459-63. doi: 10.1007/BF00360654. Mamm Genome. 1995. PMID: 7579887
-
New nucleotide sequence data on the EMBL File Server.Nucleic Acids Res. 1992 Jul 11;20(13):3531-46. doi: 10.1093/nar/20.13.3531. Nucleic Acids Res. 1992. PMID: 1630939 Free PMC article. No abstract available.
References
Publication types
MeSH terms
Substances
Associated data
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions
- Actions