Mutation and single nucleotide polymorphism detection using temperature gradient capillary electrophoresis
- PMID: 14628908
- DOI: 10.1586/14737159.3.6.811
Mutation and single nucleotide polymorphism detection using temperature gradient capillary electrophoresis
Abstract
Rapid, high-throughput mutation and single nucleotide polymorphism detection technologies are necessary to identify sequence alterations responsible for human disease. Several screening techniques have been developed as alternatives to the costly and time-consuming task of direct gene sequencing. Unfortunately, many of these techniques have relatively low mutation detection sensitivities and/or require significant up-front assay optimization. Temperature gradient capillary electrophoresis is a relatively new mutation screening technology that capitalizes on the denaturing effects of temperature and the high resolution capacity of capillary electrophoresis to detect heteroduplexes formed between mutant and wild type gene sequences. The utility of temperature gradient capillary electrophoresis for the detection of known sequence alterations and as a tool for mutation discovery is reviewed.
Similar articles
-
Cycling gradient capillary electrophoresis: a low-cost tool for high-throughput analysis of genetic variations.Electrophoresis. 2003 Jun;24(11):1716-22. doi: 10.1002/elps.200305384. Electrophoresis. 2003. PMID: 12783447
-
High throughput DNA sequence variant detection by conformation sensitive capillary electrophoresis and automated peak comparison.Genomics. 2006 Mar;87(3):427-32. doi: 10.1016/j.ygeno.2005.11.008. Epub 2006 Jan 9. Genomics. 2006. PMID: 16406726
-
Capillary electrophoresis-based single strand DNA conformation analysis in high-throughput mutation screening.Hum Mutat. 2003 May;21(5):455-65. doi: 10.1002/humu.10169. Hum Mutat. 2003. PMID: 12673787 Review.
-
Integrated platform for detection of DNA sequence variants using capillary array electrophoresis.Electrophoresis. 2002 May;23(10):1499-511. doi: 10.1002/1522-2683(200205)23:10<1499::AID-ELPS1499>3.0.CO;2-X. Electrophoresis. 2002. PMID: 12116161
-
Review of denaturant capillary electrophoresis in DNA variation analysis.Electrophoresis. 2005 Jun;26(13):2520-30. doi: 10.1002/elps.200410403. Electrophoresis. 2005. PMID: 15934053 Review.
Cited by
-
Rapid detection of isoniazid, rifampin, and ofloxacin resistance in Mycobacterium tuberculosis clinical isolates using high-resolution melting analysis.J Clin Microbiol. 2011 Oct;49(10):3450-7. doi: 10.1128/JCM.01068-11. Epub 2011 Aug 10. J Clin Microbiol. 2011. PMID: 21832014 Free PMC article.
-
DNA diagnostics: nanotechnology-enhanced electrochemical detection of nucleic acids.Pediatr Res. 2010 May;67(5):458-68. doi: 10.1203/PDR.0b013e3181d361c3. Pediatr Res. 2010. PMID: 20075759 Free PMC article. Review.
-
Rapid Detection of Mycobacterium tuberculosis Strains Resistant to Isoniazid and/or Rifampicin: Standardization of Multiplex Polymerase Chain Reaction Analysis.Am J Trop Med Hyg. 2016 Dec 7;95(6):1257-1264. doi: 10.4269/ajtmh.16-0120. Epub 2016 Oct 24. Am J Trop Med Hyg. 2016. PMID: 27928076 Free PMC article.
-
Rare independent mutations in renal salt handling genes contribute to blood pressure variation.Nat Genet. 2008 May;40(5):592-599. doi: 10.1038/ng.118. Epub 2008 Apr 6. Nat Genet. 2008. PMID: 18391953 Free PMC article.
MeSH terms
LinkOut - more resources
Full Text Sources