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. 2004 Jan 1;32(Database issue):D401-5.
doi: 10.1093/nar/gkh009.

CADRE: the Central Aspergillus Data REpository

J E Mabey  1 , M J Anderson, P F Giles, C J Miller, T K Attwood, N W Paton, E Bornberg-Bauer, G D Robson, S G Oliver, D W Denning
Affiliations

CADRE: the Central Aspergillus Data REpository

J E Mabey et al. Nucleic Acids Res. .

Abstract

CADRE is a public resource for housing and analysing genomic data extracted from species of Aspergillus. It arose to enable maintenance of the complete annotated genomic sequence of Aspergillus fumigatus and to provide tools for searching, analysing and visualizing features of fungal genomes. By implementing CADRE using Ensembl, a framework is in place for storing and comparing several genomes: the resource will thus expand by including other Aspergillus genomes (such as Aspergillus nidulans) as they become available. CADRE is accessible at http://www.cadre. man.ac.uk.

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Figures

Figure 1
Figure 1
Screenshot of ContigView. A region of 100 kb around the niaD locus is shown in the top panel (or ‘Overview’); names for all predicted genes within that region of the assembly are also displayed. A region of 20 kb around the niaD locus is shown in the bottom panel (or ‘Detailed View’); names and structures of all predicted transcripts within that region of the assembly are also displayed. In both panels, transcripts are colour-coded according to their classification: i.e. known, red; putative, grey; and novel, black. Each transcript is labelled with its standard name, if known; otherwise the systematic name is used.
Figure 2
Figure 2
Screenshot of GeneView. The report generated for the gene niaD is shown. The top section provides a summary of information concerning the gene of interest, whereas the bottom section provides further details pertaining to each predicted transcript. For each transcript, a clickable image of the transcript neighbourhood is provided. As in ContigView, each transcript in this image is colour-coded and provides a pop-up menu of further information and hyperlinks. In addition, exon (only some are shown here) and splice-site (omitted) information is provided for each transcript.
See this image and copyright information in PMC

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