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. 2004 Aug 12;20(12):1964-5.
doi: 10.1093/bioinformatics/bth161. Epub 2004 Feb 26.

GenAlyzer: interactive visualization of sequence similarities between entire genomes

Jomuna V Choudhuri  1 , Chris Schleiermacher, Stefan Kurtz, Robert Giegerich
Affiliations

GenAlyzer: interactive visualization of sequence similarities between entire genomes

Jomuna V Choudhuri et al. Bioinformatics. .

Abstract

Summary: Genalyzer is a software tool designed for the interactive visualization of sequence matches between DNA or protein sequences. It provides visualizations on different levels of granularity, from complete overviews via zoomed regions to alignments of particular matching substrings. Genalyzer can efficiently handle very large datasets, allowing to display tens of thousands of matches between sequences of tens of millions of bases.

Availability: Genalyzer is available free of charge for non-commercial research institutions. For more details, see http://www.genalyzer.de

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