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. 2004 Nov 22;20(17):3252-5.
doi: 10.1093/bioinformatics/bth352. Epub 2004 Jun 4.

Automatic annotation of organellar genomes with DOGMA

Stacia K Wyman  1 , Robert K Jansen, Jeffrey L Boore
Affiliations

Automatic annotation of organellar genomes with DOGMA

Stacia K Wyman et al. Bioinformatics. .

Abstract

The Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of organellar (plant chloroplast and animal mitochondrial) genomes. It is a Web-based package that allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes. DOGMA provides a graphical user interface for viewing and editing annotations. Annotations are stored on our password-protected server to enable repeated sessions of working on the same genome. Finished annotations can be extracted for direct submission to GenBank.

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