Mössbauer characterization of an unusual high-spin side-on peroxo-Fe3+ species in the active site of superoxide reductase from Desulfoarculus Baarsii. Density functional calculations on related models
- PMID: 15236590
- DOI: 10.1021/bi0498151
Mössbauer characterization of an unusual high-spin side-on peroxo-Fe3+ species in the active site of superoxide reductase from Desulfoarculus Baarsii. Density functional calculations on related models
Abstract
Superoxide reductase (SOR) is an Fe protein that catalyzes the reduction of superoxide to give H(2)O(2). Recently, the mutation of the Glu47 residue into alanine (E47A) in the active site of SOR from Desulfoarculus baarsii has allowed the stabilization of an iron-peroxo species when quickly reacted with H(2)O(2) [Mathé et al. (2002) J. Am. Chem. Soc. 124, 4966-4967]. To further investigate this non-heme peroxo-iron species, we have carried out a Mössbauer study of the (57)Fe-enriched E47A SOR from D. baarsii reacted quickly with H(2)O(2). Considering the Mössbauer data, we conclude, in conjunction with the other spectroscopic data available and with the results of density functional calculations on related models, that this species corresponds to a high-spin side-on peroxo-Fe(3+) complex. This is one of the first examples of such a species in a biological system for which Mössbauer parameters are now available: delta(/Fe) = 0.54 (1) mm/s, DeltaE(Q) = -0.80 (5) mm/s, and the asymmetry parameter eta = 0.60 (5) mm/s. The Mössbauer and spin Hamiltonian parameters have been evaluated on a model from the side-on peroxo complex (model 2) issued from the oxidized iron center in SOR from Pyrococcus furiosus, for which structural data are available in the literature [Yeh et al. (2000) Biochemistry 39, 2499-2508]. For comparison, similar calculations have been carried out on a model derived from 2 (model 3), where the [CH(3)-S](1)(-) group has been replaced by the neutral [NH(3)](0) group [Neese and Solomon (1998) J. Am. Chem. Soc. 120, 12829-12848]. Both models 2 and 3 contain a formally high-spin Fe(3+) ion (i.e., with empty minority spin orbitals). We found, however, a significant fraction ( approximately 0.6 for 2, approximately 0.8 for 3) of spin (equivalently charge) spread over two occupied (minority spin) orbitals. The quadrupole splitting value for 2 is found to be negative and matches quite well the experimental value. The computed quadrupole tensors are rhombic in the case of 2 and axial in the case of 3. This difference originates directly from the presence of the thiolate ligand in 2. A correlation between experimental isomer shifts for Fe(3+) mononuclear complexes with computed electron densities at the iron nucleus has been built and used to evaluate the isomer shift values for 2 and 3 (0.56 and 0.63 mm/s, respectively). A significant increase of isomer shift value is found upon going from a methylthiolate to a nitrogen ligand for the Fe(3+) ion, consistent with covalency effects due to the presence of the axial thiolate ligand. Considering that the isomer shift value for 3 is likely to be in the 0.61-0.65 mm/s range [Horner et al. (2002) Eur. J. Inorg. Chem., 3278-3283], the isomer shift value for a high-spin eta(2)-O(2) Fe(3+) complex with an axial thiolate group can be estimated to be in the 0.54-0.58 mm/s range. The occurrence of a side-on peroxo intermediate in SOR is discussed in relation to the recent data published for a side-on peroxo-Fe(3+) species in another biological system [Karlsson et al. (2003) Science 299, 1039-1042].
Similar articles
-
Fe(3+)-eta(2)-peroxo species in superoxide reductase from Treponema pallidum. Comparison with Desulfoarculus baarsii.Biophys Chem. 2006 Jan 1;119(1):38-48. doi: 10.1016/j.bpc.2005.06.013. Epub 2005 Aug 9. Biophys Chem. 2006. PMID: 16084640
-
Fe3+-hydroxide ligation in the superoxide reductase from Desulfoarculus baarsii is associated with pH dependent spectral changes.J Am Chem Soc. 2005 Nov 30;127(47):16436-41. doi: 10.1021/ja053808y. J Am Chem Soc. 2005. PMID: 16305229
-
End-on and side-on peroxo derivatives of non-heme iron complexes with pentadentate ligands: models for putative intermediates in biological iron/dioxygen chemistry.Inorg Chem. 2003 Apr 21;42(8):2639-53. doi: 10.1021/ic034065p. Inorg Chem. 2003. PMID: 12691572
-
High-valent iron complexes with tetraamido macrocyclic ligands: structures, Mössbauer spectroscopy, and DFT calculations.J Inorg Biochem. 2006 Apr;100(4):606-19. doi: 10.1016/j.jinorgbio.2005.12.016. Epub 2006 Feb 7. J Inorg Biochem. 2006. PMID: 16464502 Review.
-
Avoiding high-valent iron intermediates: superoxide reductase and rubrerythrin.J Inorg Biochem. 2006 Apr;100(4):679-93. doi: 10.1016/j.jinorgbio.2005.12.017. Epub 2006 Feb 28. J Inorg Biochem. 2006. PMID: 16504301 Review.
Cited by
-
Influence of the nitrogen donors on nonheme iron models of superoxide reductase: high-spin Fe(III)-OOR complexes.J Am Chem Soc. 2010 Jan 13;132(1):157-67. doi: 10.1021/ja904818z. J Am Chem Soc. 2010. PMID: 20000711 Free PMC article.
-
Spectroscopic description of an unusual protonated ferryl species in the catalase from Proteus mirabilis and density functional theory calculations on related models. Consequences for the ferryl protonation state in catalase, peroxidase and chloroperoxidase.J Biol Inorg Chem. 2007 May;12(4):509-25. doi: 10.1007/s00775-006-0203-9. Epub 2007 Jan 20. J Biol Inorg Chem. 2007. PMID: 17237942
-
Superoxide dismutases and superoxide reductases.Chem Rev. 2014 Apr 9;114(7):3854-918. doi: 10.1021/cr4005296. Epub 2014 Apr 1. Chem Rev. 2014. PMID: 24684599 Free PMC article. Review. No abstract available.
-
A functional model for the cysteinate-ligated non-heme iron enzyme superoxide reductase (SOR).J Am Chem Soc. 2006 Nov 15;128(45):14448-9. doi: 10.1021/ja064870d. J Am Chem Soc. 2006. PMID: 17090014 Free PMC article.
-
SORGOdb: Superoxide Reductase Gene Ontology curated DataBase.BMC Microbiol. 2011 May 16;11:105. doi: 10.1186/1471-2180-11-105. BMC Microbiol. 2011. PMID: 21575179 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Medical