Severe acute respiratory syndrome coronavirus phylogeny: toward consensus

doi:10.1128/JVI.78.15.7863-7866.2004

. 2004 Aug;78(15):7863-6.

doi: 10.1128/JVI.78.15.7863-7866.2004.

Severe acute respiratory syndrome coronavirus phylogeny: toward consensus

Alexander E Gorbalenya¹, Eric J Snijder, Willy J M Spaan

Affiliations

PMID: 15254158
PMCID: PMC446116
DOI: 10.1128/JVI.78.15.7863-7866.2004

Severe acute respiratory syndrome coronavirus phylogeny: toward consensus

Alexander E Gorbalenya et al. J Virol. 2004 Aug.

. 2004 Aug;78(15):7863-6.

doi: 10.1128/JVI.78.15.7863-7866.2004.

Authors

Alexander E Gorbalenya¹, Eric J Snijder, Willy J M Spaan

Affiliation

¹ Department of Medical Microbiology, Center of Infectious Diseases, Leiden University Medical Center, Leiden, The Netherlands. a.e.gorbalenya@lumc.nl

PMID: 15254158
PMCID: PMC446116
DOI: 10.1128/JVI.78.15.7863-7866.2004

No abstract available

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Figures

**FIG. 1.**
Overview of the SARS-CoV genome organization and proteins (20). The positions of coronavirus group-specific genetic and structural markers are indicated. SARS-CoV has the markers of group 2 coronaviruses. In the N-terminal part of the S protein, only Cys residues are distributed in a group-specific fashion (5) (dashed line). SUD, SARS-CoV-unique domain; PL2^pro, group 2 papain-like protease 2; TM2, transmembrane domain 2; 3CL^pro, chymotrypsin-like protease related to 3C^pro of picornaviruses.

**FIG. 2.**
Two alternative scenarios of SARS-CoV evolution, shown on the same coronavirus tree with alternative roots. The SARS-CoV branch splits, for the sake of comparison, from an ancestor of the other known coronaviruses (A) or, as defined in reference , from the group 2 branch (B). IBV, infectious bronchitis virus; TGEV, porcine transmissible gastroenteritis virus; EToV, equine torovirus. BCoV-Lun and other BCoV strains are most closely related to HCoV OC43, which was not included in the analysis.

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References

1. Bell, Y. C., B. L. Semler, and E. Ehrenfeld. 1999. Requirements for RNA replication of a poliovirus replicon by coxsackievirus B3 RNA polymerase. J. Virol. 73:9413-9421. - PMC - PubMed
1. Bujarski, J. J. 1997. Experimental systems of genetic recombination and defective RNA formation in RNA viruses. Part II. Semin. Virol. 8:75-76.
1. Chouljenko, V. N., X. Q. Lin, J. Storz, K. G. Kousoulas, and A. E. Gorbalenya. 2001. Comparison of genomic and predicted amino acid sequences of respiratory and enteric bovine coronaviruses isolated from the same animal with fatal shipping pneumonia. J. Gen. Virol. 82:2927-2933. - PubMed
1. de Haan, C. A. M., P. S. Masters, X. L. Shen, S. Weiss, and P. J. M. Rottier. 2002. The group-specific murine coronavirus genes are not essential, but their deletion, by reverse genetics, is attenuating in the natural host. Virology 296:177-189. - PMC - PubMed
1. Eickmann, M., S. Becker, H. D. Klenk, H. W. Doerr, K. Stadler, S. Censini, S. Guidotti, V. Masignani, M. Scarselli, M. Mora, C. Donati, J. H. Han, H. C. Song, S. Abrignani, A. Covacci, and R. Rappuoli. 2003. Phylogeny of the SARS coronavirus. Science 302:1504-1505. - PubMed

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[1] Bell, Y. C., B. L. Semler, and E. Ehrenfeld. 1999. Requirements for RNA replication of a poliovirus replicon by coxsackievirus B3 RNA polymerase. J. Virol. 73:9413-9421. - PMC - PubMed

[2] Bell, Y. C., B. L. Semler, and E. Ehrenfeld. 1999. Requirements for RNA replication of a poliovirus replicon by coxsackievirus B3 RNA polymerase. J. Virol. 73:9413-9421. - PMC - PubMed

[3] Bujarski, J. J. 1997. Experimental systems of genetic recombination and defective RNA formation in RNA viruses. Part II. Semin. Virol. 8:75-76.

[4] Bujarski, J. J. 1997. Experimental systems of genetic recombination and defective RNA formation in RNA viruses. Part II. Semin. Virol. 8:75-76.

[5] Chouljenko, V. N., X. Q. Lin, J. Storz, K. G. Kousoulas, and A. E. Gorbalenya. 2001. Comparison of genomic and predicted amino acid sequences of respiratory and enteric bovine coronaviruses isolated from the same animal with fatal shipping pneumonia. J. Gen. Virol. 82:2927-2933. - PubMed

[6] Chouljenko, V. N., X. Q. Lin, J. Storz, K. G. Kousoulas, and A. E. Gorbalenya. 2001. Comparison of genomic and predicted amino acid sequences of respiratory and enteric bovine coronaviruses isolated from the same animal with fatal shipping pneumonia. J. Gen. Virol. 82:2927-2933. - PubMed

[7] de Haan, C. A. M., P. S. Masters, X. L. Shen, S. Weiss, and P. J. M. Rottier. 2002. The group-specific murine coronavirus genes are not essential, but their deletion, by reverse genetics, is attenuating in the natural host. Virology 296:177-189. - PMC - PubMed

[8] de Haan, C. A. M., P. S. Masters, X. L. Shen, S. Weiss, and P. J. M. Rottier. 2002. The group-specific murine coronavirus genes are not essential, but their deletion, by reverse genetics, is attenuating in the natural host. Virology 296:177-189. - PMC - PubMed

[9] Eickmann, M., S. Becker, H. D. Klenk, H. W. Doerr, K. Stadler, S. Censini, S. Guidotti, V. Masignani, M. Scarselli, M. Mora, C. Donati, J. H. Han, H. C. Song, S. Abrignani, A. Covacci, and R. Rappuoli. 2003. Phylogeny of the SARS coronavirus. Science 302:1504-1505. - PubMed

[10] Eickmann, M., S. Becker, H. D. Klenk, H. W. Doerr, K. Stadler, S. Censini, S. Guidotti, V. Masignani, M. Scarselli, M. Mora, C. Donati, J. H. Han, H. C. Song, S. Abrignani, A. Covacci, and R. Rappuoli. 2003. Phylogeny of the SARS coronavirus. Science 302:1504-1505. - PubMed

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Severe acute respiratory syndrome coronavirus phylogeny: toward consensus

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Severe acute respiratory syndrome coronavirus phylogeny: toward consensus

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