Large-scale analysis of pseudogenes in the human genome
- PMID: 15261647
- DOI: 10.1016/j.gde.2004.06.003
Large-scale analysis of pseudogenes in the human genome
Abstract
Pseudogenes are considered as genomic fossils: disabled copies of functional genes that were once active in the ancient genome. Recently, whole-genome computational approaches have revealed thousands of pseudogenes in the genomes of the human and other eukaryotes. Identification of these pseudogenes can improve the accuracy of gene annotation. It also offers new insight on the evolutionary history and the stability of the genome as a whole.
Copyright 2004 Elsevier Ltd.
Similar articles
-
Pseudogenes and their composers: delving in the 'debris' of human genome.Brief Funct Genomics. 2013 Nov;12(6):536-47. doi: 10.1093/bfgp/elt026. Epub 2013 Jul 29. Brief Funct Genomics. 2013. PMID: 23900003 Review.
-
GENCODE Pseudogenes.Methods Mol Biol. 2021;2324:67-82. doi: 10.1007/978-1-0716-1503-4_5. Methods Mol Biol. 2021. PMID: 34165709
-
Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22.Genome Res. 2002 Feb;12(2):272-80. doi: 10.1101/gr.207102. Genome Res. 2002. PMID: 11827946 Free PMC article.
-
Processed pseudogenes: A substrate for evolutionary innovation: Retrotransposition contributes to genome evolution by propagating pseudogene sequences with rich regulatory potential throughout the genome.Bioessays. 2021 Nov;43(11):e2100186. doi: 10.1002/bies.202100186. Epub 2021 Sep 27. Bioessays. 2021. PMID: 34569081
-
Pseudogenes: pseudo or real functional elements?J Genet Genomics. 2013 Apr 20;40(4):171-7. doi: 10.1016/j.jgg.2013.03.003. Epub 2013 Mar 14. J Genet Genomics. 2013. PMID: 23618400 Review.
Cited by
-
Pseudogenes and Liquid Phase Separation in Epigenetic Expression.Front Oncol. 2022 Jul 8;12:912282. doi: 10.3389/fonc.2022.912282. eCollection 2022. Front Oncol. 2022. PMID: 35875144 Free PMC article. Review.
-
Pseudogenes: Four Decades of Discovery.Methods Mol Biol. 2021;2324:3-18. doi: 10.1007/978-1-0716-1503-4_1. Methods Mol Biol. 2021. PMID: 34165705
-
Re-recognition of pseudogenes: From molecular to clinical applications.Theranostics. 2020 Jan 1;10(4):1479-1499. doi: 10.7150/thno.40659. eCollection 2020. Theranostics. 2020. PMID: 32042317 Free PMC article. Review.
-
Identification of a minimal Alu domain required for retrotransposition.bioRxiv [Preprint]. 2024 Dec 16:2024.12.16.628748. doi: 10.1101/2024.12.16.628748. bioRxiv. 2024. Update in: Nucleic Acids Res. 2025 Jun 20;53(12):gkaf526. doi: 10.1093/nar/gkaf526. PMID: 39868163 Free PMC article. Updated. Preprint.
-
Identification of a minimal Alu domain required for retrotransposition.Nucleic Acids Res. 2025 Jun 20;53(12):gkaf526. doi: 10.1093/nar/gkaf526. Nucleic Acids Res. 2025. PMID: 40568936 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources