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. 2005 Mar 1;21(5):676-9.
doi: 10.1093/bioinformatics/bti079. Epub 2004 Oct 27.

HyPhy: hypothesis testing using phylogenies

Sergei L Kosakovsky Pond  1 , Simon D W Frost, Spencer V Muse
Affiliations

HyPhy: hypothesis testing using phylogenies

Sergei L Kosakovsky Pond et al. Bioinformatics. .

Abstract

The HyPhypackage is designed to provide a flexible and unified platform for carrying out likelihood-based analyses on multiple alignments of molecular sequence data, with the emphasis on studies of rates and patterns of sequence evolution.

Availability: http://www.hyphy.org

Contact: muse@stat.ncsu.edu

Supplementary information: HyPhydocumentation and tutorials are available at http://www.hyphy.org.

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