doi: 10.1093/bioinformatics/bti097.
Epub 2004 Oct 28.
COBrA: a bio-ontology editor
Affiliations
- PMID: 15513995
- DOI: 10.1093/bioinformatics/bti097
Item in Clipboard
COBrA: a bio-ontology editor
Bioinformatics.
2005 Mar.
Abstract
COBrA is a Java-based ontology editor for bio-ontologies that distinguishes itself from other editors by supporting the linking of concepts between two ontologies, and providing sophisticated analysis and verification functions. In addition to the Gene Ontology and Open Biology Ontologies formats, COBrA can import and export ontologies in the Semantic Web formats RDF, RDFS and OWL.
Similar articles
-
OBO Explorer: an editor for Open Biomedical Ontologies in OWL.Bioinformatics. 2008 Feb 1;24(3):443-4. doi: 10.1093/bioinformatics/btm593. Epub 2007 Dec 1. Bioinformatics. 2008. PMID: 18056066
-
BioPortal: ontologies and integrated data resources at the click of a mouse.Nucleic Acids Res. 2009 Jul;37(Web Server issue):W170-3. doi: 10.1093/nar/gkp440. Epub 2009 May 29. Nucleic Acids Res. 2009. PMID: 19483092 Free PMC article.
-
GOChase: correcting errors from Gene Ontology-based annotations for gene products.Bioinformatics. 2005 Mar;21(6):829-31. doi: 10.1093/bioinformatics/bti106. Epub 2004 Oct 28. Bioinformatics. 2005. PMID: 15513987
-
Biomedical ontologies: a functional perspective.Brief Bioinform. 2008 Jan;9(1):75-90. doi: 10.1093/bib/bbm059. Epub 2007 Dec 12. Brief Bioinform. 2008. PMID: 18077472 Review.
-
Controlled vocabularies and ontologies in proteomics: overview, principles and practice.Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):98-107. doi: 10.1016/j.bbapap.2013.02.017. Epub 2013 Feb 19. Biochim Biophys Acta. 2014. PMID: 23429179 Free PMC article. Review.
Cited by
-
The mouse-human anatomy ontology mapping project.Database (Oxford). 2012 Mar 20;2012:bar066. doi: 10.1093/database/bar066. Print 2012. Database (Oxford). 2012. PMID: 22434834 Free PMC article.
-
Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL.BMC Bioinformatics. 2007 Feb 20;8:57. doi: 10.1186/1471-2105-8-57. BMC Bioinformatics. 2007. PMID: 17311682 Free PMC article. Review.
-
GORouter: an RDF model for providing semantic query and inference services for Gene Ontology and its associations.BMC Bioinformatics. 2008;9 Suppl 1(Suppl 1):S6. doi: 10.1186/1471-2105-9-S1-S6. BMC Bioinformatics. 2008. PMID: 18315859 Free PMC article.
-
The AEO, an Ontology of Anatomical Entities for Classifying Animal Tissues and Organs.Front Genet. 2012 Feb 14;3:18. doi: 10.3389/fgene.2012.00018. eCollection 2012. Front Genet. 2012. PMID: 22347883 Free PMC article.
-
Systems developmental biology: the use of ontologies in annotating models and in identifying gene function within and across species.Mamm Genome. 2007 Jul;18(6-7):402-11. doi: 10.1007/s00335-007-9027-3. Epub 2007 Jun 14. Mamm Genome. 2007. PMID: 17566825 Free PMC article. Review.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources
