ESTAP--an automated system for the analysis of EST data
- PMID: 15593407
- DOI: 10.1093/bioinformatics/btg205
ESTAP--an automated system for the analysis of EST data
Abstract
The EST Analysis Pipeline (ESTAP) is a set of analytical procedures that automatically verify, cleanse, store and analyze ESTs generated on high-throughput platforms. It uses a relational database to store sequence data and analysis results, which facilitates both the search for specific information and statistical analysis. ESTAP provides for easy viewing of the original and cleansed data, as well as the analysis results via a Web browser. It also allows the data owner to submit selected sequences to dbEST in a semi-automated fashion.
Similar articles
-
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration.BMC Bioinformatics. 2008 Jan 7;9:5. doi: 10.1186/1471-2105-9-5. BMC Bioinformatics. 2008. PMID: 18179701 Free PMC article.
-
EST pipeline system: detailed and automated EST data processing and mining.Genomics Proteomics Bioinformatics. 2003 Aug;1(3):236-42. doi: 10.1016/s1672-0229(03)01029-5. Genomics Proteomics Bioinformatics. 2003. PMID: 15629036 Free PMC article.
-
CleanEST: a database of cleansed EST libraries.Nucleic Acids Res. 2009 Jan;37(Database issue):D686-9. doi: 10.1093/nar/gkn648. Epub 2008 Oct 2. Nucleic Acids Res. 2009. PMID: 18832365 Free PMC article.
-
EST processing: from trace to sequence.Methods Mol Biol. 2009;533:189-220. doi: 10.1007/978-1-60327-136-3_9. Methods Mol Biol. 2009. PMID: 19277557
-
ESAP plus: a web-based server for EST-SSR marker development.BMC Genomics. 2016 Dec 22;17(Suppl 13):1035. doi: 10.1186/s12864-016-3328-4. BMC Genomics. 2016. PMID: 28155670 Free PMC article.
Cited by
-
EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration.BMC Bioinformatics. 2008 Jan 7;9:5. doi: 10.1186/1471-2105-9-5. BMC Bioinformatics. 2008. PMID: 18179701 Free PMC article.
-
ParPEST: a pipeline for EST data analysis based on parallel computing.BMC Bioinformatics. 2005 Dec 1;6 Suppl 4(Suppl 4):S9. doi: 10.1186/1471-2105-6-S4-S9. BMC Bioinformatics. 2005. PMID: 16351758 Free PMC article.
-
EST pipeline system: detailed and automated EST data processing and mining.Genomics Proteomics Bioinformatics. 2003 Aug;1(3):236-42. doi: 10.1016/s1672-0229(03)01029-5. Genomics Proteomics Bioinformatics. 2003. PMID: 15629036 Free PMC article.
-
POSA: perl objects for DNA sequencing data analysis.BMC Genomics. 2004 Aug 27;5(1):60. doi: 10.1186/1471-2164-5-60. BMC Genomics. 2004. PMID: 15333141 Free PMC article.
-
Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages.BMC Plant Biol. 2008 Mar 4;8:27. doi: 10.1186/1471-2229-8-27. BMC Plant Biol. 2008. PMID: 18318913 Free PMC article.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Research Materials