GOAnno: GO annotation based on multiple alignment
- PMID: 15647299
- DOI: 10.1093/bioinformatics/bti252
GOAnno: GO annotation based on multiple alignment
Abstract
GOAnno is a web tool that automatically annotates proteins according to the Gene Ontology (GO) using evolutionary information available in hierarchized multiple alignments. GO terms present in the aligned functional subfamily can be cross-validated and propagated to obtain highly reliable predicted GO annotation based on the GOAnno algorithm.
Availability: The web tool and a reduced version for local installation are freely available at http://igbmc.u-strasbg.fr/GOAnno/GOAnno.html
Supplementary information: The website supplies a detailed explanation and illustration of the algorithm at http://igbmc.u-strasbg.fr/GOAnno/GOAnnoHelp.html.
Similar articles
-
MAGOS: multiple alignment and modelling server.Bioinformatics. 2006 Sep 1;22(17):2164-5. doi: 10.1093/bioinformatics/btl349. Epub 2006 Jul 4. Bioinformatics. 2006. PMID: 16820425
-
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.Proteins. 2005 Oct 1;61(1):127-36. doi: 10.1002/prot.20527. Proteins. 2005. PMID: 16044462
-
AliasServer: a web server to handle multiple aliases used to refer to proteins.Bioinformatics. 2004 Sep 22;20(14):2331-2. doi: 10.1093/bioinformatics/bth241. Epub 2004 Apr 1. Bioinformatics. 2004. PMID: 15059813
-
NPS@: network protein sequence analysis.Trends Biochem Sci. 2000 Mar;25(3):147-50. doi: 10.1016/s0968-0004(99)01540-6. Trends Biochem Sci. 2000. PMID: 10694887 Review. No abstract available.
-
Multiple sequence alignment tools on the Web.Biotechniques. 2000 Jul;29(1):60-2. doi: 10.2144/00291io01. Biotechniques. 2000. PMID: 10907078 Review. No abstract available.
Cited by
-
ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function.BMC Bioinformatics. 2019 Nov 25;20(Suppl 18):573. doi: 10.1186/s12859-019-3132-7. BMC Bioinformatics. 2019. PMID: 31760933 Free PMC article.
-
Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.BMC Bioinformatics. 2007 Jul 10;8:243. doi: 10.1186/1471-2105-8-243. BMC Bioinformatics. 2007. PMID: 17620146 Free PMC article.
-
PoGO: Prediction of Gene Ontology terms for fungal proteins.BMC Bioinformatics. 2010 Apr 29;11:215. doi: 10.1186/1471-2105-11-215. BMC Bioinformatics. 2010. PMID: 20429880 Free PMC article.
-
Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton.BMC Genomics. 2007 Aug 29;8:294. doi: 10.1186/1471-2164-8-294. BMC Genomics. 2007. PMID: 17727702 Free PMC article.
-
High-throughput functional annotation and data mining with the Blast2GO suite.Nucleic Acids Res. 2008 Jun;36(10):3420-35. doi: 10.1093/nar/gkn176. Epub 2008 Apr 29. Nucleic Acids Res. 2008. PMID: 18445632 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources