Review
doi: 10.1186/gb-2005-6-2-206.
Epub 2005 Jan 27.
Genome-wide analysis of the context-dependence of regulatory networks
Affiliations
- PMID: 15693953
- PMCID: PMC551525
- DOI: 10.1186/gb-2005-6-2-206
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Review
Genome-wide analysis of the context-dependence of regulatory networks
Genome Biol.
2005.
Abstract
Genome-wide analytical tools are now allowing the discovery of the design rules that govern regulatory networks. Two recent studies in yeast have helped reveal the relatively small number of transcription-factor control strategies that cells employ to maximize their regulatory options using only a small number of components.
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References
-
- Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DMA microarray. Science. 1995;270:467–470. - PubMed
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