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. 2005 May 15;21(10):2537-8.
doi: 10.1093/bioinformatics/bti331. Epub 2005 Mar 1.

Protein structure topological comparison, discovery and matching service

G M Torrance  1 , D R Gilbert, I Michalopoulos, D W Westhead
Affiliations

Protein structure topological comparison, discovery and matching service

G M Torrance et al. Bioinformatics. .

Abstract

We describe a fold level fast protein comparison and motif matching facility based on the TOPS representation of structure. This provides an update to a previous service at the EBI, with a better graph matching with faster results and visualization of both the structures being compared against and the common pattern of each with the target domain.

Availability: Web service at http://balabio.dcs.gla.ac.uk/tops or via the main TOPS site at http://www.tops.leeds.ac.uk. Software is also available for download from these sites.

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