Comparative Study
doi: 10.1093/bioinformatics/bti354.
Epub 2005 Mar 3.
SNP discovery using advanced algorithms and neural networks
Affiliations
- PMID: 15746291
- DOI: 10.1093/bioinformatics/bti354
Item in Clipboard
Comparative Study
SNP discovery using advanced algorithms and neural networks
Bioinformatics.
.
Abstract
Forage is an application which uses two neural networks for detecting single nucleotide polymorphisms (SNPs). Potential SNP candidates are identified in multiple alignments. Each candidate is then represented by a vector of features, which is classified as SNP or monomorphic by the networks. A validated dataset of SNPs was constructed from experimentally verified SNP data and used for network training and method evalutation.
Availability: The package is available at biobase.biotech.kth.se/forage/
Similar articles
-
SEAN: SNP prediction and display program utilizing EST sequence clusters.Bioinformatics. 2006 Feb 15;22(4):495-6. doi: 10.1093/bioinformatics/btk006. Epub 2005 Dec 15. Bioinformatics. 2006. PMID: 16357032
-
SNP-PHAGE--High throughput SNP discovery pipeline.BMC Bioinformatics. 2006 Oct 23;7:468. doi: 10.1186/1471-2105-7-468. BMC Bioinformatics. 2006. PMID: 17059604 Free PMC article.
-
A new method for SNP discovery.Biotechniques. 2009 Mar;46(3):201-8. doi: 10.2144/000113075. Biotechniques. 2009. PMID: 19317663
-
Genome resequencing and genetic variation.Nat Biotechnol. 2008 Jan;26(1):65-6. doi: 10.1038/nbt0108-65. Nat Biotechnol. 2008. PMID: 18183021 Review. No abstract available.
-
Homology assessment and molecular sequence alignment.J Biomed Inform. 2006 Feb;39(1):18-33. doi: 10.1016/j.jbi.2005.11.005. Epub 2005 Dec 9. J Biomed Inform. 2006. PMID: 16380300 Review.
Cited by
-
PineSAP--sequence alignment and SNP identification pipeline.Bioinformatics. 2009 Oct 1;25(19):2609-10. doi: 10.1093/bioinformatics/btp477. Epub 2009 Aug 10. Bioinformatics. 2009. PMID: 19667082 Free PMC article.
-
Seq4SNPs: new software for retrieval of multiple, accurately annotated DNA sequences, ready formatted for SNP assay design.BMC Bioinformatics. 2009 Jun 12;10:180. doi: 10.1186/1471-2105-10-180. BMC Bioinformatics. 2009. PMID: 19523221 Free PMC article.
-
Genetic epidemiology in aging research.J Gerontol A Biol Sci Med Sci. 2009 Jan;64(1):47-60. doi: 10.1093/gerona/gln021. Epub 2009 Jan 23. J Gerontol A Biol Sci Med Sci. 2009. PMID: 19168782 Free PMC article. Review.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
