Quantum wave packet ab initio molecular dynamics: an approach to study quantum dynamics in large systems
- PMID: 15836199
- DOI: 10.1063/1.1871876
Quantum wave packet ab initio molecular dynamics: an approach to study quantum dynamics in large systems
Abstract
A methodology to efficiently conduct simultaneous dynamics of electrons and nuclei is presented. The approach involves quantum wave packet dynamics using an accurate banded, sparse and Toeplitz representation for the discrete free propagator, in conjunction with ab initio molecular dynamics treatment of the electronic and classical nuclear degree of freedom. The latter may be achieved either by using atom-centered density-matrix propagation or by using Born-Oppenheimer dynamics. The two components of the methodology, namely, quantum dynamics and ab initio molecular dynamics, are harnessed together using a time-dependent self-consistent field-like coupling procedure. The quantum wave packet dynamics is made computationally robust by using adaptive grids to achieve optimized sampling. One notable feature of the approach is that important quantum dynamical effects including zero-point effects, tunneling, as well as over-barrier reflections are treated accurately. The electronic degrees of freedom are simultaneously handled at accurate levels of density functional theory, including hybrid or gradient corrected approximations. Benchmark calculations are provided for proton transfer systems and the dynamics results are compared with exact calculations to determine the accuracy of the approach.
Similar articles
-
Combining quantum wavepacket ab initio molecular dynamics with QM/MM and QM/QM techniques: Implementation blending ONIOM and empirical valence bond theory.J Chem Phys. 2008 Aug 7;129(5):054109. doi: 10.1063/1.2956496. J Chem Phys. 2008. PMID: 18698890
-
Quantum wavepacket ab initio molecular dynamics: an approach for computing dynamically averaged vibrational spectra including critical nuclear quantum effects.J Phys Chem A. 2007 Oct 18;111(41):10313-24. doi: 10.1021/jp074522d. Epub 2007 Sep 26. J Phys Chem A. 2007. PMID: 17894476
-
Quantum fluctuation of electronic wave-packet dynamics coupled with classical nuclear motions.J Chem Phys. 2005 Feb 22;122(8):84113. doi: 10.1063/1.1854115. J Chem Phys. 2005. PMID: 15836026
-
Ab initio molecular dynamics with density functional theory.Annu Rev Phys Chem. 2002;53:249-90. doi: 10.1146/annurev.physchem.53.090401.105737. Epub 2001 Oct 4. Annu Rev Phys Chem. 2002. PMID: 11972009 Review.
-
Accurate and robust molecular crystal modeling using fragment-based electronic structure methods.Top Curr Chem. 2014;345:59-93. doi: 10.1007/128_2013_502. Top Curr Chem. 2014. PMID: 24292635 Review.
Cited by
-
Ab initio Molecular Dynamics Simulation Study of Dissociation Electron Attachment to Lactic Acid and Isomer.Sci Rep. 2019 Dec 20;9(1):19532. doi: 10.1038/s41598-019-56019-4. Sci Rep. 2019. PMID: 31862917 Free PMC article.
-
Gauging the flexibility of the active site in soybean lipoxygenase-1 (SLO-1) through an atom-centered density matrix propagation (ADMP) treatment that facilitates the sampling of rare events.J Phys Chem B. 2012 Aug 30;116(34):10145-64. doi: 10.1021/jp3015047. Epub 2012 Aug 17. J Phys Chem B. 2012. PMID: 22838384 Free PMC article.
-
Analysis of Hydrogen Tunneling in an Enzyme Active Site using von Neumann Measurements.J Chem Theory Comput. 2010;6(5):6-10. doi: 10.1021/ct900630n. J Chem Theory Comput. 2010. PMID: 22933858 Free PMC article.
-
Biochemistry and theory of proton-coupled electron transfer.Chem Rev. 2014 Apr 9;114(7):3381-465. doi: 10.1021/cr4006654. Epub 2014 Apr 1. Chem Rev. 2014. PMID: 24684625 Free PMC article. Review. No abstract available.
-
Multiscale simulation of microbe structure and dynamics.Prog Biophys Mol Biol. 2011 Oct;107(1):200-17. doi: 10.1016/j.pbiomolbio.2011.07.006. Epub 2011 Jul 23. Prog Biophys Mol Biol. 2011. PMID: 21802438 Free PMC article.
LinkOut - more resources
Full Text Sources