Supercooled liquid-like solvent in trypsin crystals: implications for crystal annealing and temperature-controlled X-ray radiation damage studies
- PMID: 15840916
- DOI: 10.1107/S0909049505003316
Supercooled liquid-like solvent in trypsin crystals: implications for crystal annealing and temperature-controlled X-ray radiation damage studies
Abstract
The study of temperature-dependent physical changes in flash-cooled macromolecular crystals is pertinent to cryocrystallography and related issues such as crystal annealing, X-ray radiation damage and kinetic crystallography. In this context, the unit-cell volume of flash-cooled trigonal and orthorhombic trypsin crystals has been monitored upon warming from 100 to 200 K and subsequent re-cooling to 100 K. Crystals of both forms were obtained under the same crystallization conditions, yet they differ in solvent content and channel size. An abrupt non-reversible unit-cell volume decrease is observed at 185 K in orthorhombic and at 195 K in trigonal crystals as the temperature is increased; this result is consistent with ultra-viscous solvent leaving the crystals. Concomitant appearance of ice rings in the diffraction patterns suggests that the transported solvent forms crystalline ice. These results demonstrate that solvent in flash-cooled protein crystals is liquid-like near its crystallization temperature, as has been proposed, yet controversially discussed, for the case of pure water. The use of mineral oil prevents the unit-cell volume decrease in trigonal but not in orthorhombic crystals. The observation of liquid-like solvent has implications in the development of annealing protocols and points a way to the rational design of temperature-controlled crystallographic studies that aim either at studying specific radiation damage or at trapping enzymatic intermediate states.
Similar articles
-
Annealing macromolecular crystals.Methods Mol Biol. 2007;364:31-42. doi: 10.1385/1-59745-266-1:31. Methods Mol Biol. 2007. PMID: 17172759
-
The role of solvent transport in cryo-annealing of macromolecular crystals.Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):412-21. doi: 10.1107/S0907444903027938. Epub 2004 Feb 25. Acta Crystallogr D Biol Crystallogr. 2004. PMID: 14993664
-
Large-scale networks of hydration water molecules around bovine beta-trypsin revealed by cryogenic X-ray crystal structure analysis.J Mol Biol. 1999 Jun 11;289(3):547-64. doi: 10.1006/jmbi.1999.2795. J Mol Biol. 1999. PMID: 10356328
-
Radiation damage in macromolecular cryocrystallography.Curr Opin Struct Biol. 2006 Oct;16(5):624-9. doi: 10.1016/j.sbi.2006.08.001. Epub 2006 Aug 30. Curr Opin Struct Biol. 2006. PMID: 16938450 Review.
-
Macromolecular cryocrystallography--methods for cooling and mounting protein crystals at cryogenic temperatures.Methods. 2004 Nov;34(3):415-23. doi: 10.1016/j.ymeth.2004.03.032. Methods. 2004. PMID: 15325658 Review.
Cited by
-
Crystallization of recombinant green mamba ρ-Da1a toxin during a lyophilization procedure and its structure determination.Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):704-9. doi: 10.1107/S1744309113011470. Epub 2013 May 29. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013. PMID: 23722859 Free PMC article.
-
Liquid-like water confined in stacks of biological membranes at 200 k and its relation to protein dynamics.Biophys J. 2005 Nov;89(5):3639-46. doi: 10.1529/biophysj.104.055749. Epub 2005 Jul 29. Biophys J. 2005. PMID: 16055529 Free PMC article.
-
Progress in rational methods of cryoprotection in macromolecular crystallography.Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):366-73. doi: 10.1107/S090744490903995X. Epub 2010 Mar 24. Acta Crystallogr D Biol Crystallogr. 2010. PMID: 20382989 Free PMC article.
-
XANES measurements of the rate of radiation damage to selenomethionine side chains.J Synchrotron Radiat. 2007 Jan;14(Pt 1):51-72. doi: 10.1107/S0909049506048898. Epub 2006 Dec 15. J Synchrotron Radiat. 2007. PMID: 17211072 Free PMC article.
-
Slow cooling of protein crystals.J Appl Crystallogr. 2009 Oct 1;42(Pt 5):944-952. doi: 10.1107/S0021889809023553. Epub 2009 Aug 1. J Appl Crystallogr. 2009. PMID: 19798409 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources