Phasing at resolution higher than the experimental resolution
- PMID: 15858265
- DOI: 10.1107/S090744490500404X
Phasing at resolution higher than the experimental resolution
Abstract
Limited experimental resolution is a unavoidable feature in macromolecular crystallography: it may hinder or make difficult the determination of the crystal structure. A novel procedure is presented which from an approximate electron-density map extrapolates the moduli and phases of non-measured reflections beyond and behind the experimental resolution limit. Applications to a set of test structures show that the extrapolation can be successfully accomplished. As a consequence, the phase estimates of the observed reflections are subsequently improved and the interpretability of the corresponding electron-density map increases. The use of the extrapolated values for the non-measured reflections provides additional information for the map, which shows a resolution higher than the experimental resolution.
Similar articles
-
Ab initio phasing at resolution higher than experimental resolution.Acta Crystallogr D Biol Crystallogr. 2005 Aug;61(Pt 8):1080-7. doi: 10.1107/S0907444905015519. Epub 2005 Jul 20. Acta Crystallogr D Biol Crystallogr. 2005. PMID: 16041073
-
Improving experimental phasing: the role of strongest reflections.Acta Crystallogr D Biol Crystallogr. 2005 Jul;61(Pt 7):899-902. doi: 10.1107/S0907444905008553. Epub 2005 Jun 24. Acta Crystallogr D Biol Crystallogr. 2005. PMID: 15983412
-
Experimental methods for measuring accurate high-amplitude phases and their importance in isomorphous replacement experiments.Acta Crystallogr D Biol Crystallogr. 2005 Nov;61(Pt 11):1521-7. doi: 10.1107/S0907444905027423. Epub 2005 Oct 19. Acta Crystallogr D Biol Crystallogr. 2005. PMID: 16239730
-
EDM-DEDM and protein crystal structure solution.Acta Crystallogr D Biol Crystallogr. 2009 May;65(Pt 5):477-84. doi: 10.1107/S0907444909008609. Epub 2009 Apr 18. Acta Crystallogr D Biol Crystallogr. 2009. PMID: 19390153 Review.
-
ACORN: a review.Acta Crystallogr D Biol Crystallogr. 2006 Aug;62(Pt 8):901-8. doi: 10.1107/S0907444906008122. Epub 2006 Jul 18. Acta Crystallogr D Biol Crystallogr. 2006. PMID: 16855307 Review.
Cited by
-
How far are we from automatic crystal structure solution via molecular-replacement techniques?Acta Crystallogr D Struct Biol. 2020 Jan 1;76(Pt 1):9-18. doi: 10.1107/S2059798319015468. Epub 2020 Jan 1. Acta Crystallogr D Struct Biol. 2020. PMID: 31909739 Free PMC article.
-
Bringing diffuse X-ray scattering into focus.Curr Opin Struct Biol. 2018 Jun;50:109-116. doi: 10.1016/j.sbi.2018.01.009. Epub 2018 Feb 16. Curr Opin Struct Biol. 2018. PMID: 29455056 Free PMC article. Review.
-
A new autocatalytic activation mechanism for cysteine proteases revealed by Prevotella intermedia interpain A.J Biol Chem. 2008 Feb 1;283(5):2871-82. doi: 10.1074/jbc.M708481200. Epub 2007 Nov 9. J Biol Chem. 2008. PMID: 17993455 Free PMC article.
-
Practical structure solution with ARCIMBOLDO.Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):336-43. doi: 10.1107/S0907444911056071. Epub 2012 Mar 16. Acta Crystallogr D Biol Crystallogr. 2012. PMID: 22505254 Free PMC article.
-
Macromolecular ab initio phasing enforcing secondary and tertiary structure.IUCrJ. 2015 Jan 1;2(Pt 1):95-105. doi: 10.1107/S2052252514024117. eCollection 2015 Jan 1. IUCrJ. 2015. PMID: 25610631 Free PMC article. Review.
MeSH terms
LinkOut - more resources
Full Text Sources
Research Materials