Structure-function relationships in plant phenylpropanoid biosynthesis
- PMID: 15860421
- PMCID: PMC2861907
- DOI: 10.1016/j.pbi.2005.03.013
Structure-function relationships in plant phenylpropanoid biosynthesis
Abstract
Plants, as sessile organisms, evolve and exploit metabolic systems to create a rich repertoire of complex natural products that hold adaptive significance for their survival in challenging ecological niches on earth. As an experimental tool set, structural biology provides a high-resolution means to uncover detailed information about the structure-function relationships of metabolic enzymes at the atomic level. Together with genomic and biochemical approaches and an appreciation of molecular evolution, structural enzymology holds great promise for addressing a number of questions relating to secondary or, more appropriately, specialized metabolism. Why is secondary metabolism so adaptable? How are reactivity, regio-chemistry and stereo-chemistry steered during the multi-step conversion of substrates into products? What are the vestigial structural and mechanistic traits that remain in biosynthetic enzymes during the diversification of substrate and product selectivity? What does the catalytic landscape look like as an enzyme family traverses all possible lineages en route to the acquisition of new substrate and/or product specificities? And how can one rationally engineer biosynthesis using the unique perspectives of evolution and structural biology to create novel chemicals for human use?
Similar articles
-
Harnessing evolutionary diversification of primary metabolism for plant synthetic biology.J Biol Chem. 2019 Nov 8;294(45):16549-16566. doi: 10.1074/jbc.REV119.006132. Epub 2019 Sep 26. J Biol Chem. 2019. PMID: 31558606 Free PMC article. Review.
-
A role for intra- and intercellular translocation in natural product biosynthesis.Curr Opin Plant Biol. 2005 Jun;8(3):292-300. doi: 10.1016/j.pbi.2005.03.009. Curr Opin Plant Biol. 2005. PMID: 15860426 Review.
-
The evolutionary paths towards complexity: a metabolic perspective.New Phytol. 2014 Mar;201(4):1141-9. doi: 10.1111/nph.12416. Epub 2013 Jul 26. New Phytol. 2014. PMID: 23889087 Review.
-
Understanding metabolic diversification in plants: branchpoints in the evolution of specialized metabolism.Philos Trans R Soc Lond B Biol Sci. 2024 Nov 18;379(1914):20230359. doi: 10.1098/rstb.2023.0359. Epub 2024 Sep 30. Philos Trans R Soc Lond B Biol Sci. 2024. PMID: 39343032 Free PMC article. Review.
-
Something Old, Something New: Conserved Enzymes and the Evolution of Novelty in Plant Specialized Metabolism.Plant Physiol. 2015 Nov;169(3):1512-23. doi: 10.1104/pp.15.00994. Epub 2015 Aug 14. Plant Physiol. 2015. PMID: 26276843 Free PMC article. Review.
Cited by
-
Ectopic Expression of FvVND4c Promotes Secondary Cell Wall Thickening and Flavonoid Accumulation in Fragaria vesca.Int J Mol Sci. 2023 Apr 30;24(9):8110. doi: 10.3390/ijms24098110. Int J Mol Sci. 2023. PMID: 37175817 Free PMC article.
-
Towards Sustainable Agarwood Production: Integrating Microbial Interactions, Anatomical Changes, and Metabolite Biosynthesis.J Ind Microbiol Biotechnol. 2025 Aug 20;52:kuaf025. doi: 10.1093/jimb/kuaf025. Online ahead of print. J Ind Microbiol Biotechnol. 2025. PMID: 40833630 Free PMC article.
-
Cytotoxic activity of callus extract from Vachellia farnesiana (L) Wight & Arn.3 Biotech. 2024 Oct;14(10):235. doi: 10.1007/s13205-024-04085-5. Epub 2024 Sep 18. 3 Biotech. 2024. PMID: 39310034
-
A comprehensive review on the chemical constituents, sesquiterpenoid biosynthesis and biological activities of Sarcandra glabra.Nat Prod Bioprospect. 2023 Nov 27;13(1):53. doi: 10.1007/s13659-023-00418-8. Nat Prod Bioprospect. 2023. PMID: 38010490 Free PMC article. Review.
-
A comparative metabolomics analysis of the components of heartwood and sapwood in Taxus chinensis (Pilger) Rehd.Sci Rep. 2019 Nov 27;9(1):17647. doi: 10.1038/s41598-019-53839-2. Sci Rep. 2019. PMID: 31776382 Free PMC article.
References
-
-
Borevitz JO, Ecker JR. Plant genomics: the third wave. Annu Rev Genomics Hum Genet. 2004;5:443–477. This review constitutes a comprehensive analysis of the methods and approaches employed in modern-day genomic analyses in plants.
-
-
- Pichersky E, Gang DR. Genetics and biochemistry of secondary metabolites in plants: an evolutionary perspective. Trends Plant Sci. 2000;5:439–445. - PubMed
-
- Kim SH, Shin DH, Choi IG, Schulze-Gahmen U, Chen S, Kim R. Structure-based functional inference in structural genomics. J Struct Funct Genomics. 2003;4:129–135. - PubMed
-
-
Pal D, Eisenberg D. Inference of protein function from protein structure. Structure. 2005;13:121–130. This paper details how one can extract important functional inferences from the structures of proteins.
-
-
-
Goldsmith-Fischman S, Honig B. Structural genomics: computational methods for structure analysis. Protein Sci. 2003;12:1813–1821. This overview of structural genomics provides a flow chart for computational approaches to analyze and extract information from protein structures.
-
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Research Materials