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Review

. 2005 Jun;138(2):550-4.

doi: 10.1104/pp.104.900150.

Systems biology for the virtual plant

Rodrigo A Gutiérrez¹, Dennis E Shasha, Gloria M Coruzzi

Affiliations

PMID: 15955912
PMCID: PMC1150368
DOI: 10.1104/pp.104.900150

Review

Systems biology for the virtual plant

Rodrigo A Gutiérrez et al. Plant Physiol. 2005 Jun.

. 2005 Jun;138(2):550-4.

doi: 10.1104/pp.104.900150.

Authors

Rodrigo A Gutiérrez¹, Dennis E Shasha, Gloria M Coruzzi

Affiliation

¹ Department of Biology, New York University, New York, New York 10003, USA.

PMID: 15955912
PMCID: PMC1150368
DOI: 10.1104/pp.104.900150

No abstract available

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Figures

Figure 1. — Figure 1.
Systems biology for the Virtual Plant. The ultimate goal of systems biology applied to plant research is to generate a model of the plant as a whole that describes processes across all layers of biological organization (molecular, cellular, physiological, organismal, and ecological; peripheral spiral, dotted arrows). Systems biology embodies an iterative process of experimentation at a global level, data integration, system modeling, and generation of hypotheses (internal cycle, solid arrows). These hypotheses lead to the design of new experiments that start a new round of the cycle. Each iteration refines the model and deepens our biological understanding of the system. Ultimately, such models may be used in a predictive mode and applied to improving traits associated with agriculture.

See this image and copyright information in PMC

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References

1. Birnbaum K, Shasha DE, Wang JY, Jung JW, Lambert GM, Galbraith DW, Benfey PN (2003) A gene expression map of the Arabidopsis root. Science 302: 1956–1960 - PubMed
1. Ideker T, Galitski T, Hood L (2001. a) A new approach to decoding life: systems biology. Annu Rev Genomics Hum Genet 2: 343–372 - PubMed
1. Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, Eng JK, Bumgarner R, Goodlett DR, Aebersold R, Hood L (2001. b) Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 292: 929–934 - PubMed
1. Karp PD (1996) A strategy for database interoperation. J Comput Biol 2: 573–586 - PubMed
1. Kitano H (2001) Foundations of Systems Biology. MIT Press, Cambridge, MA

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