This site needs JavaScript to work properly. Please enable it to take advantage of the complete set of features!

Skip to main page content

Add to Collections

Your saved search

Name of saved search:

Search terms:

Test search terms

Would you like email updates of new search results?

Yes
No

Email: (change)

Frequency:

Which day?

Which day?

Report format:

Send at most:

Send even when there aren't any new results

Optional text in email:

Your RSS Feed

Review

. 2005 Jun;138(2):585-90.

doi: 10.1104/pp.105.061812.

High-throughput RNA isolation technologies. New tools for high-resolution gene expression profiling in plant systems

Ji-Young Lee¹, Mitchell Levesque, Philip N Benfey

Affiliations

PMID: 15955922
PMCID: PMC1150379
DOI: 10.1104/pp.105.061812

Review

High-throughput RNA isolation technologies. New tools for high-resolution gene expression profiling in plant systems

Ji-Young Lee et al. Plant Physiol. 2005 Jun.

. 2005 Jun;138(2):585-90.

doi: 10.1104/pp.105.061812.

Authors

Ji-Young Lee¹, Mitchell Levesque, Philip N Benfey

Affiliation

¹ Department of Biology, Duke University, Durham, North Carolina 27708, USA.

PMID: 15955922
PMCID: PMC1150379
DOI: 10.1104/pp.105.061812

No abstract available

PubMed Disclaimer

Figures

Figure 1. — Figure 1.
Schematic of isolation of single cell or tissue type for transcript profiling. A, Micropipetting. B, LCM. C, Protoplasting and sorting.

See this image and copyright information in PMC

Similar articles

Exploring plant transcriptomes using ultra high-throughput sequencing.
Wang L, Li P, Brutnell TP. Wang L, et al. Brief Funct Genomics. 2010 Mar;9(2):118-28. doi: 10.1093/bfgp/elp057. Epub 2010 Feb 3. Brief Funct Genomics. 2010. PMID: 20130067 Review.
Open architecture expression profiling of plant transcriptomes and gene discovery using GeneCalling technology.
Crasta OR, Folkerts O. Crasta OR, et al. Methods Mol Biol. 2003;236:381-94. doi: 10.1385/1-59259-413-1:381. Methods Mol Biol. 2003. PMID: 14501077
Next-generation sequencing technologies for gene expression profiling in plants.
Jain M. Jain M. Brief Funct Genomics. 2012 Jan;11(1):63-70. doi: 10.1093/bfgp/elr038. Epub 2011 Dec 6. Brief Funct Genomics. 2012. PMID: 22155524 Review.
Transcriptomics on small samples.
Roy SJ, Conn SJ, Mayo GM, Athman A, Gilliham M. Roy SJ, et al. Methods Mol Biol. 2012;913:335-50. doi: 10.1007/978-1-61779-986-0_22. Methods Mol Biol. 2012. PMID: 22895770
Laser microdissection of paraffin-embedded plant tissues for transcript profiling.
Day RC. Day RC. Methods Mol Biol. 2010;655:321-46. doi: 10.1007/978-1-60761-765-5_22. Methods Mol Biol. 2010. PMID: 20734271

See all similar articles

Cited by

Arabidopsis ABA INSENSITIVE4 regulates lipid mobilization in the embryo and reveals repression of seed germination by the endosperm.
Penfield S, Li Y, Gilday AD, Graham S, Graham IA. Penfield S, et al. Plant Cell. 2006 Aug;18(8):1887-99. doi: 10.1105/tpc.106.041277. Epub 2006 Jul 14. Plant Cell. 2006. PMID: 16844907 Free PMC article.
Statistical evaluation of transcriptomic data generated using the Affymetrix one-cycle, two-cycle and IVT-Express RNA labelling protocols with the Arabidopsis ATH1 microarray.
Holman TJ, Wilson MH, Kenobi K, Dryden IL, Hodgman TC, Wood AT, Holdsworth MJ. Holman TJ, et al. Plant Methods. 2010 Mar 15;6:9. doi: 10.1186/1746-4811-6-9. Plant Methods. 2010. PMID: 20230623 Free PMC article.
Unique and overlapping expression patterns among members of photosynthesis-associated nuclear gene families in Arabidopsis.
Sawchuk MG, Donner TJ, Head P, Scarpella E. Sawchuk MG, et al. Plant Physiol. 2008 Dec;148(4):1908-24. doi: 10.1104/pp.108.126946. Epub 2008 Sep 26. Plant Physiol. 2008. PMID: 18820083 Free PMC article.
A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors.
Caldana C, Scheible WR, Mueller-Roeber B, Ruzicic S. Caldana C, et al. Plant Methods. 2007 Jun 8;3:7. doi: 10.1186/1746-4811-3-7. Plant Methods. 2007. PMID: 17559651 Free PMC article.
Global functional analyses of rice promoters by genomics approaches.
Yu SM, Ko SS, Hong CY, Sun HJ, Hsing YI, Tong CG, Ho TH. Yu SM, et al. Plant Mol Biol. 2007 Nov;65(4):417-25. doi: 10.1007/s11103-007-9232-1. Epub 2007 Oct 9. Plant Mol Biol. 2007. PMID: 17922261

See all "Cited by" articles

References

1. Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796–815 - PubMed
1. Asano T, Masumura T, Kusano H, Kikuchi S, Kurita A, Shimada H, Kadowaki K-I (2002) Construction of a specialized cDNA library from plant cells isolated by laser capture microdissection: toward comprehensive analysis of the genes expressed in the rice phloem. Plant J 32: 401–408 - PubMed
1. Baugh LR, Hill AA, Brown EL, Hunter CP (2001) Quantitative analysis of mRNA amplification by in vitro transcription. Nucleic Acids Res 29: e29. - PMC - PubMed
1. Becker JD, Boavida LC, Carneiro J, Haury M, Feijó JA (2003) Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome. Plant Physiol 133: 713–725 - PMC - PubMed
1. Bennetzen JL, Coleman C, Liu R, Ma J, Ramakrishna W (2004) Consistent over-estimation of gene number in complex plant genomes. Curr Opin Plant Biol 7: 732–736 - PubMed

Publication types

Actions
Actions

MeSH terms

Actions
Actions
Actions
Actions
Actions
Actions

Substances

Actions

LinkOut - more resources

Full Text Sources
- PubMed Central
- Silverchair Information Systems
Other Literature Sources
- The Lens - Patent Citations Database