Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2005 Aug 15;21(16):3454-5.
doi: 10.1093/bioinformatics/bti546. Epub 2005 Jun 16.

Querying and computing with BioCyc databases

Affiliations

Querying and computing with BioCyc databases

Markus Krummenacker et al. Bioinformatics. .

Abstract

We describe multiple methods for accessing and querying the complex and integrated cellular data in the BioCyc family of databases: access through multiple file formats, access through Application Program Interfaces (APIs) for LISP, Perl and Java, and SQL access through the BioWarehouse relational database.

PubMed Disclaimer

References

    1. Karp P, Paley S, Romero P. The Pathway Tools Software. Bioinformatics. 2002a;18:S225–S232. - PubMed
    1. Karp P, Riley M, Paley S, Pellegrini-Toole A. The MetaCyc database. Nuc. Acids Res. 2002b;30(1):59–61. - PMC - PubMed
    1. Karp P, Riley M, Saier M, Paulsen I, Paley S, Pellegrini-Toole A. The EcoCyc database. Nuc. Acids Res. 2002c;30(1):56–8. - PMC - PubMed
    1. Karp PD. An ontology for biological function based on molecular interactions. Bioinformatics. 2000;16(3):269–285. - PubMed
    1. Mueller L, Zhang P, Rhee S. AraCyc, a biochemical pathway database for Arabidopsis. Plant Physiology. 2003;132:453–460. - PMC - PubMed

Publication types

MeSH terms