Biomolecular interaction network database
- PMID: 15975228
- DOI: 10.1093/bib/6.2.194
Biomolecular interaction network database
Abstract
This software review looks at the utility of the Biomolecular Interaction Network Database (BIND) as a web database. BIND offers methods common to related biology databases and specialisations for its protein interaction data. Searching and browsing this database is easy and well integrated with the underlying data and the needs of scientists. Interaction networks are visualised with software that offers many useful options. The innovative ontoglyphs are used throughout to provide visual cues to protein functions, localisation and other aspects one needs to know for this data set. One can expect to get useful results that may be well integrated with one's research needs.
Similar articles
-
Searching the MINT database for protein interaction information.Curr Protoc Bioinformatics. 2003 Aug;Chapter 8:Unit 8.5. doi: 10.1002/0471250953.bi0805s02. Curr Protoc Bioinformatics. 2003. PMID: 18428712
-
Visualisation and navigation methods for typed protein-protein interaction networks.Appl Bioinformatics. 2003;2(3 Suppl):S19-24. Appl Bioinformatics. 2003. PMID: 15130812
-
PROTEIOS: an open source proteomics initiative.Bioinformatics. 2005 May 1;21(9):2085-7. doi: 10.1093/bioinformatics/bti291. Epub 2005 Feb 3. Bioinformatics. 2005. PMID: 15691852
-
Deciphering protein-protein interactions. Part I. Experimental techniques and databases.PLoS Comput Biol. 2007 Mar 30;3(3):e42. doi: 10.1371/journal.pcbi.0030042. PLoS Comput Biol. 2007. PMID: 17397251 Free PMC article. Review. No abstract available.
-
Cataloging the relationships between proteins: a review of interaction databases.Mol Biotechnol. 2006 Sep;34(1):69-93. doi: 10.1385/MB:34:1:69. Mol Biotechnol. 2006. PMID: 16943573 Review.
Cited by
-
Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks.BMC Syst Biol. 2010 Jul 15;4:96. doi: 10.1186/1752-0509-4-96. BMC Syst Biol. 2010. PMID: 20633292 Free PMC article.
-
Functional features of gene expression profiles differentiating gastrointestinal stromal tumours according to KIT mutations and expression.BMC Cancer. 2009 Nov 27;9:413. doi: 10.1186/1471-2407-9-413. BMC Cancer. 2009. PMID: 19943934 Free PMC article.
-
Neglog: Homology-Based Negative Data Sampling Method for Genome-Scale Reconstruction of Human Protein-Protein Interaction Networks.Int J Mol Sci. 2019 Oct 12;20(20):5075. doi: 10.3390/ijms20205075. Int J Mol Sci. 2019. PMID: 31614890 Free PMC article.
-
Pathway Cross-Talk Analysis in Detecting Significant Pathways in Barrett's Esophagus Patients.Med Sci Monit. 2017 Mar 6;23:1165-1172. doi: 10.12659/msm.899623. Med Sci Monit. 2017. PMID: 28263955 Free PMC article.
-
Genes regulated by caloric restriction have unique roles within transcriptional networks.Mech Ageing Dev. 2008 Oct;129(10):580-92. doi: 10.1016/j.mad.2008.06.001. Epub 2008 Jun 27. Mech Ageing Dev. 2008. PMID: 18634819 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources