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. 2005 Jul 1;33(Web Server issue):W36-8.
doi: 10.1093/nar/gki410.

Protein structure prediction servers at University College London

Kevin Bryson  1 , Liam J McGuffin, Russell L Marsden, Jonathan J Ward, Jaspreet S Sodhi, David T Jones
Affiliations

Protein structure prediction servers at University College London

Kevin Bryson et al. Nucleic Acids Res. .

Abstract

A number of state-of-the-art protein structure prediction servers have been developed by researchers working in the Bioinformatics Unit at University College London. The popular PSIPRED server allows users to perform secondary structure prediction, transmembrane topology prediction and protein fold recognition. More recent servers include DISOPRED for the prediction of protein dynamic disorder and DomPred for domain boundary prediction. These servers are available from our software home page at http://bioinf.cs.ucl.ac.uk/software.html.

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Figures

Figure 1
Figure 1
Domain prediction using the DomPred server for the human polypyrimidine tract-binding protein.
Figure 2
Figure 2
Structure of the human polypyrimidine tract-binding protein showing two domains with the disorder regions (magenta) predicted by DISOPRED.
See this image and copyright information in PMC

References

    1. McGuffin L.J., Bryson K., Jones D.T. The PSIPRED protein structure prediction server. Bioinformatics. 2000;16:404–405. - PubMed
    1. Jones D.T. Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 1999;292:195–202. - PubMed
    1. Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 1997;25:3389–3402. - PMC - PubMed
    1. Rost B., Eyrich V.A. EVA: large-scale analysis of secondary structure prediction. Proteins. 2001;5:192–199. - PubMed
    1. Jones D.T. Do transmembrane protein superfolds exist? FEBS Lett. 1998;423:281–285. - PubMed

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